Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 >seq2 Length=1446810 Score = 129 bits (142), Expect = 6e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || |||||||| ||||| | |||||||| || |||||||| ||||| | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| ||| || | ||| || || || |||||| |||||||| ||||| | Sbjct 440624 AAGGT--TCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCG 440567 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714 | |||||||| ||||| ||| | || | || | | || | ||||| | || ||| Sbjct 440566 GGATGCCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCG 440508 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| ||| | |||||| ||||||||||| || || || ||||||||| Sbjct 440507 ACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCATA 440457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || ||| | || | |||||| ||||| || ||| Sbjct 440198 GTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCA 440139 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| || ||||| || ||||| || || || ||||| ||| || || Sbjct 440138 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTG 440079 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||| || | | ||| || || | ||| | ||||| |||||||| || Sbjct 440078 ACATTGTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTC 440019 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 440018 TTGACGAAGATCTGCATA 440001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063541140800