Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 >seq2 Length=1446810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| || | |||| || | ||| ||||||||| | ||||| ||||| Sbjct 440228 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 440169 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || ||||| ||||| ||||||||||| || || | || Sbjct 440168 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 440109 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| ||| ||||| || | | ||| || | | |||||| Sbjct 440108 ATCCCCTCCTTGTCCTGGATCTTGCTC-TTGACATTGTCGATTGTATCACTTGACTCGAC 440050 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| | || || || || || ||||| Sbjct 440049 TTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369256052292