Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq22 89.7 5e-13 >seq2 Length=1446810 Score = 113 bits (124), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| || |||||||| || || | ||||| || || || ||||||||||| | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||| || | || || || || |||||| |||||||| ||||| | Sbjct 440624 AAGGT--TCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCG 440567 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| ||||| ||| || || | | || | ||||||| || || | Sbjct 440566 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGA 440507 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||| || | |||||| |||||||| || || || || ||||||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCATA 440457 >seq22 Length=364263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 156167 GCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATG 156226 ||||| | || || || |||||||||||||| ||||| || |||||||||||| | | Sbjct 68984 GCCGGTCGGGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGAAG 68925 Query 156227 TGCACCGACGCCATTTTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTT 156286 |||| ||||| | | | || | |||||| | ||||| | |||| ||||| | Sbjct 68924 TGCATCGACGTGAGCTGACCCATCGAAGGGTTGGTCATGTGGATATTGAGGGATTGCGAT 68865 Query 156287 TGATCGATAAATGCTCCCCTGTCTGCTGCCATTTCAATCATA 156328 ||||||||||| ||||| | ||| || || | || || ||| Sbjct 68864 TGATCGATAAAGGCTCCTCGGTCGGCAGCGAGATCGATGATA 68823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013931011680