Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 1e-15 seq22 96.9 5e-15 seq15 91.5 2e-13 >seq18 Length=491663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| || |||| || || || ||||| ||||||||||| | ||| || |||| | Sbjct 181758 GAGGGTGACTTGGGACCGGTCTATGGATTTCAGTGGAGGCATTTCGGCGCCGAGTA-CAA 181816 Query 70124 GAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 ||| |||||| || ||| |||| ||||| || ||||| || | | | ||||||| Sbjct 181817 GACGTGCGAGGATGATTATACGGGACAGGGCGTCGATCAGCTGGCGCAAGTGATTGACAA 181876 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 |||||| ||| || || |||||| ||||| | ||| || |||||||||| Sbjct 181877 GATCAAGAACAACCCGACGGATAGGCGGATCATTATGAGCGCATGGAATCC 181927 >seq22 Length=364263 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 97991 TGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGT 98050 ||| ||||| ||||||||| ||| ||| || | ||||||| |||||||||||||| Sbjct 68742 TGGCTCCATCCAAAACATTCCCAACATTCCTGCAGAGTTGAAGGCTATCTACAAGACTGT 68801 Query 98051 CTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTG 98109 ||||| || | | | ||| | |||||| | ||||||||| |||| | || || | Sbjct 68802 TTGGGAAAT-CAGCCAGAAGGGTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCG 68860 Query 98110 ACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGA 98169 | || ||||| ||||| | || | || | || | ||| | || |||| Sbjct 68861 ATCAATCGCAATCCCTCAATATCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGA 68920 Query 98170 TACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAAC 98224 | ||||| |||| ||||| || || |||||||| ||||||||||| || |||| Sbjct 68921 TGCACTTCTACGGTTGGAAGAAAGGACTCAAGACCGGCATGTACTACTTGCGAAC 68975 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 ||||| | ||||| ||||||||||| || || ||||| ||||| | || || ||| | Sbjct 67544 TCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTCGAAAGAACCACG 67603 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || ||||| | |||||| | ||| |||| || || |||||| | || || |||||| Sbjct 67604 GCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTACGCGCTCTGGATCCCCGACATGTTCA 67663 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 || || ||| | | | ||| ||||| | ||||||||| || || || |||| Sbjct 67664 TGCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAACGAGTGTCCGGGTC 67723 Query 97090 TGTCCGA 97096 ||||||| Sbjct 67724 TGTCCGA 67730 >seq15 Length=506865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 252/381 (66%), Gaps = 23/381 (6%) Strand=Plus/Plus Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 ||||||| |||||||||||||| || |||||||||||||||||| | ||||| | | Sbjct 482777 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGACTGACGTTCTCCAACGAACTCA 482836 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGC 125598 | || ||||||||||| || ||| |||||||| || || || || | | ||| Sbjct 482837 TCTCCCGAGACGAGGGTCTCCACACCGACTTTGCATGCCTCCTCTT---CACCCACCTGA 482893 Query 125599 GTC-CCGAGTGCAGATCC---AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 | ||| || | || | | || || | ||||| | | || ||||| Sbjct 482894 AACGACGACCGC--ACCCGGAAACCGTGGAACG--CATCATCCGT------GAAGCCGTC 482943 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | ||| || || || || || |||| || ||| |||| ||||||||| Sbjct 482944 GACCTCGAATGTGAATTCCTGACGGACGCCCTGCCCGTCTCGTTGATCGGCATGAACGAA 483003 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG- 125773 ||||| |||||| ||||||| ||| || || |||||||| || || |||| Sbjct 483004 AAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCT---CGTCGCCCTTGGA 483060 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | |||| | ||||||| | || || || || || ||| | ||| || || || Sbjct 483061 AACGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAACATTTCGCTCCAG 483120 Query 125832 GGTAAGACCAACTTTTTCGAG 125852 ||||| |||||||||||||| Sbjct 483121 GGTAAAGCCAACTTTTTCGAG 483141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058514520240