Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 105 2e-17 >seq2 Length=1446810 Score = 105 bits (116), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || || |||| ||| ||||| || || |||||| Sbjct 439970 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGACCATCTTCGAGCTGCTTTCCA 439911 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 439910 GCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTG 439851 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | ||| ||| ||||| || || || ||||| || ||||| || Sbjct 439850 ACATTGTCGATAGTGTC-CGAGGATTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || | |||| |||||| || | || ||||| Sbjct 440654 GTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTGCTTTCCG 440595 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || || || || || || ||||| || ||||||||||| | || Sbjct 440594 GCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTG 440535 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | ||| || || || || || || ||||| || || | || Sbjct 440534 ACATTGTCGATAGTGTC-CGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGTCAACGT 440476 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 440475 CTTCACAAAGATTTGCAT 440458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397308330392