Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 141 8e-29 seq4 95.1 1e-14 seq21 84.2 2e-11 >seq2 Length=1446810 Score = 141 bits (156), Expect = 8e-29 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||||||||| |||||||||| ||||| ||||| || | ||| ||||| | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||||||| ||| |||||| | ||||| || | |||||| || || | Sbjct 440624 A-AG-GTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCG 440567 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||| || | |||||| | ||| |||||| | | |||| Sbjct 440566 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGA 440507 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||| || ||||| || | || ||||||||||| ||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | |||||||| ||||||||||| || |||||||| || | ||| | Sbjct 440464 TTTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGT 440405 Query 94833 AATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| | || ||| | ||| || ||||| ||||| | ||||| |||| |||||| Sbjct 440404 AGTCG--GAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTG 440347 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || || || ||||| || || || | || || | || || | ||| ||||| | Sbjct 440346 GTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGA 440287 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || ||||| |||||||| || || || |||||||| Sbjct 440286 GGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || | | |||| ||||| ||| || |||||||| | ||| || ||| Sbjct 440228 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 440169 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| || || ||||||| |||| ||||| || |||||| Sbjct 440168 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 440109 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || || ||||| | || || |||||| | ||| || ||| | || ||||| Sbjct 440108 ATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCA-CTTGACTCGAC 440050 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 440049 TTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 >seq4 Length=1260884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||||||||| |||||||||||||| || ||||| || | ||| || ||| | Sbjct 784713 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 784654 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || ||| | ||||| |||| ||||| || || || Sbjct 784653 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 784594 Query 94901 ATACCTTCTTTGTCATAAAT 94920 |||||||| ||||| | ||| Sbjct 784593 ATACCTTCCTTGTCTTGAAT 784574 >seq21 Length=401567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAA 94852 ||| ||||||||||| || || ||||| || | ||| || | | | || ||| | | Sbjct 241806 CAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGT--CCGAAAGGGTTCGGCCA 241863 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| | ||||| |||| ||||| || || || || ||||| ||| Sbjct 241864 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 241923 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | | ||||| || | |||||| Sbjct 241924 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 241983 Query 94973 GTTTTTCCAGTAAG 94986 || || || || || Sbjct 241984 GTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290785330640