Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 seq22 111 1e-19 seq4 107 2e-18 seq21 105 6e-18 >seq2 Length=1446810 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||| |||||||| |||||||||||||| | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| | |||||| || ||| |||| || || |||||||| || ||| Sbjct 440624 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGG 440565 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| || | |||||||| Sbjct 440564 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACT 440505 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| | || || || || || ||||| Sbjct 440504 TCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||||||||||||||| ||| | || || ||| || ||||||||||| Sbjct 440198 GTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCA 440139 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || ||||||||||| ||||| || || || ||||| ||| || |||| Sbjct 440138 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTG 440079 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | ||||||| || | ||| | || || ||||| | || Sbjct 440078 ACATTGTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTC 440019 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 440018 TTGACGAAGATCTGCAT 440002 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| ||||| || || || | ||| || ||||| || |||||||| ||| Sbjct 440456 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 440397 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || ||| |||| || || |||||||| || ||| Sbjct 440396 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 440337 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || || | | || | || || | ||| || | Sbjct 440336 ATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACT 440277 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| ||||| || |||||||||||||| Sbjct 440276 TCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||| || | || | || || ||||| || ||||||||||| Sbjct 440000 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 439941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || ||| |||| || || ||||| || ||||| Sbjct 439940 AGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 439881 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | ||| || | ||| |||| Sbjct 439880 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACC 439821 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || ||||| ||||| | | ||| Sbjct 439820 TCGAGAGTGATGGTCTTTCCGGTAAGAGTCTGTTCGA 439784 >seq22 Length=364263 Score = 111 bits (122), Expect = 1e-19 Identities = 477/745 (64%), Gaps = 8/745 (1%) Strand=Plus/Minus Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807 ||| ||||| ||||||||||| || |||||||| |||| |||| ||| ||||| Sbjct 68976 GGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGAAGTGCATCGA 68917 Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 ||| | | || | || || | | || | ||| || ||||| |||||| || Sbjct 68916 CGTGAGCTGACCCATCGAAGGGTTGGTCATGTGGATATTGAGGGATTGCGATTGATCGAT 68857 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCATTTCCCAAGCGGT 144927 || || |||||||| || | || || |||| || | ||||||||| | || Sbjct 68856 AAAGGCTCCTCGGTCGGCAGCGAGATCGATGATACCCTTCTGGCTGATTTCCCAAACAGT 68797 Query 144928 CTTGTACAAA-CGTTTAA-TGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985 |||||| | | | || || | || | |||||| | ||| || || || || | Sbjct 68796 CTTGTAGATAGCCTTCAACTCTG--CAGGAATGTTGGGAATGTTTTGGATGGAGCCACCG 68739 Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTTAACTTGATCAAGTCGTC 145044 || || | || |||| ||| ||| ||| | || | |||| |||||| Sbjct 68738 TGTGCGATGATTCGGTTCTTCATCTCGT-CGTCCCAGAGACCCAGGTTGACCAAGTCACG 68680 Query 145045 AATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTT 145104 | || | | ||||||||| || || ||||| | |||||| || | || | ||| Sbjct 68679 CAACAACCAGGGGCAGACGACCTGGAAATCACCGGCGAGCACACGTCGGGAGTAAATGTT 68620 Query 145105 AGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGG 145164 ||| | ||||| ||| | ||||| |||||| ||||| | ||| | ||| || || Sbjct 68619 GCTGGTGTACGGTTCGAAACATTCGTTCCAGCCCAGAATTTGTGAGGTGGATGCAGTCGG 68560 Query 145165 CATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGT 145224 |||| || |||| | || ||||| ||||| ||| ||| | |||| | || Sbjct 68559 CATGGGAGCGACCAGGAGCGAGTTGCGTAGGCCAGTCTTGGCGATCTTGGCCTTCAAGGT 68500 Query 145225 ACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC 145284 |||||||||| || | | ||| | | | |||| | |||||||||||| |||| | Sbjct 68499 TGCCCAATCCCAGAGGGGCGACGGGGTAATGCCCCAAAGGTCGTACTGCAACTTGCCTTG 68440 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCC-CAAGTTTTGGCGAGCTCGCAAC 145343 ||||| ||| ||||| ||| |||| |||| | | || | || | ||| || Sbjct 68439 ACTGGCCGGGGAGCCTTCGTAGGTCTGGTAAGGGCCCTCCACTTCT-GCCATCTCAGAAG 68381 Query 145344 TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| || ||| || || || || || ||||||| |||||| | |||| Sbjct 68380 ACGACTCGAGCGCGGCGTGGTAGATGGTTTCAAAAATTTGCACGTTGAGTTGTCGGGCTT 68321 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | ||| | |||||||||| | ||| | ||||||||| || || | || | Sbjct 68320 CGGGACCGTCGAAAGGCATGCGCAATGCCATAAAGGTATCGGCGAGACCTTGAACACCGA 68261 Query 145464 CGCCGATGGGCCGATGTTTCATGTT 145488 |||| || || ||| |||||| Sbjct 68260 GACCGACAGGACGGTGTCGCATGTT 68236 >seq4 Length=1260884 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||||||||||| || |||||||| ||| | Sbjct 784713 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 784654 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 784653 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 784594 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 784593 ATACCTTCCTTGTC 784580 >seq21 Length=401567 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || || || || | ||| |||||||| ||||||||||| || Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 241971 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| ||||| || || Sbjct 241972 TCGAGGGTGATGGTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012363388160