Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=1446810 Score = 113 bits (124), Expect = 4e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||| || | ||||| | ||||| ||||| || Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || ||| | || | ||| ||||| ||||| || || || ||| Sbjct 440518 GACACTATCGA--CAATGTCAAGTCCAAGATTCA-GGACAAGGAAGGCATCCCGCCCGAC 440574 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || ||| | || || ||||| || || || || || | ||| || || |||||| Sbjct 440575 CAGCAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTAC 440634 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| || || || || || || || || Sbjct 440635 AACATTCAGAAGGAGTCTACCCTGCACTTGGT 440666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 ||||| | ||||| || ||||||| |||| || || || || ||||||||||| || Sbjct 439790 AGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCGA--CAA 439847 Query 25075 TG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTT 25132 || ||| || ||| ||||| || || ||||| ||||| || || || | || || Sbjct 439848 TGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTT 439907 Query 25133 TGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATC 25192 || || || || | ||||||| ||| || | |||||||| || || || ||||| Sbjct 439908 CGCTGGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGGAATC 439967 Query 25193 CACGCTACA 25201 |||||| || Sbjct 439968 CACGCTTCA 439976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 ||||||||||||| || ||||||| | ||||| || ||||| ||||| || || Sbjct 440760 AGACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACG 440819 Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 | ||| || ||| ||||| ||||| ||||| || ||||| || || | || |||| Sbjct 440820 TCAAGTCGAAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTG 440879 Query 25135 CCGGCAAACAATTAGAAGATG 25155 |||| || || || ||||||| Sbjct 440880 CCGGAAAGCAGTTGGAAGATG 440900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327609192310