Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq4 96.9 3e-15 seq21 84.2 2e-11 >seq2 Length=1446810 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| || ||| |||| |||||||| || || | Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| |||||||| || || || ||||| || Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || ||||| || ||||| ||||| || ||| | || ||||||||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || |||||||||||||| || ||| Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGGT 440685 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || |||| || ||||| ||| || | Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || || || || ||||||||||| || || || || Sbjct 440290 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 440349 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| | || ||| || ||| | ||||| |||||| Sbjct 440350 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 440409 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | || || || |||||||||| || ||| Sbjct 440410 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGGT 440457 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||| | ||||| || || ||||||| || || ||| || | || || | ||| || || Sbjct 439792 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCGACAATGTC 439851 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || ||||||||||| ||||| || ||||| ||||| | || || || Sbjct 439852 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 439911 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || || ||| | || ||| || ||| |||| ||||||||||| || || |||||||| Sbjct 439912 GGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGGAATCCACG 439971 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||| |||| || ||| Sbjct 439972 CTTCACCTCGTCTTGCGGCTGCGGGGTGGT 440001 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| | ||||| || | | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| ||||| ||| | || || ||| || ||||||| |||||| Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 440182 ATTCAAAAGGAGTCGAC 440198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||||| ||||| || || ||||| | ||||| ||| | | || || | ||| | || Sbjct 440762 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 440821 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || ||||||||||| || ||||| ||||| || ||||| | || |||||| Sbjct 440822 AAGTCGAAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 440881 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || || ||||| || ||| | | ||| | || ||||||| Sbjct 440882 GGAAAGCAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 440921 >seq4 Length=1260884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||||||||| ||||| || || || || || || | || || |||||||| ||| Sbjct 784574 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 784633 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | || ||| ||| ||| | ||||| |||||||| || || || || || | || || Sbjct 784634 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 784693 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || ||| Sbjct 784694 GTCTTGCGATTGCGAGGTGGT 784714 >seq21 Length=401567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| || || || || || | || ||| | ||| | |||| Sbjct 241994 ACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCC 241935 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || || || || || || || || | || || |||||||| Sbjct 241934 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGCAAG 241875 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||| ||| | || || ||||||||||| || || |||||| | || Sbjct 241874 CAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCTTGCAC 241815 Query 22423 TTAGTTTTG 22431 || || ||| Sbjct 241814 TTGGTCTTG 241806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727621457810