Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq21 152 9e-32 seq4 109 1e-18 seq5 86.0 1e-11 >seq2 Length=1446810 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| | ||||| || || |||||||| || ||||| || || | ||| Sbjct 440444 CGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCA 440385 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || ||||| || | || ||| ||||| || || || || ||||| Sbjct 440384 TCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTA 440325 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| | || || ||||||||||| | ||||| ||||| | |||||| Sbjct 440324 TCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATT 440265 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||||||||| |||||||| Sbjct 440264 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| || || ||||| || || ||||| ||||| || | || | || Sbjct 440672 CGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCG 440613 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || |||||||| |||||||| || | | ||| |||||||| || |||||||||||| Sbjct 440612 TCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTG 440553 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||| | |||||| ||||| ||||| | || || ||||| | |||||| Sbjct 440552 TCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATC 440493 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || | ||||| || || || ||||| Sbjct 440492 GTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || | | |||| ||| || || ||||| ||||| ||||| || |||||| Sbjct 440228 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 440169 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || || | || || ||||| || ||| Sbjct 440168 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 440109 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||| ||||| || || ||| || ||| Sbjct 440108 ATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCACTTGACTCGACT 440049 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| || | |||||||||||| |||||||| Sbjct 440048 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 140 bits (154), Expect = 6e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | ||||| |||||||| |||||||| ||||| || || | || ||| ||| Sbjct 440919 TAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGG 440860 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| |||||||||||||||||||| ||||| | ||||||| || || ||||| | Sbjct 440859 TCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCCGAC 440800 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 ||||| |||||||| |||||||| || || || | |||| Sbjct 440799 GATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 440760 >seq21 Length=401567 Score = 152 bits (168), Expect = 9e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| |||||||| | |||||||| || || ||||| || || || Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || | || || ||||| || || Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 241971 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | ||||||||| || ||||||||| Sbjct 241972 TCGAGGGTGATGGTCTTACCCGTGAGG 241998 >seq4 Length=1260884 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || ||||| || |||||||| || ||||| | || | ||| Sbjct 784701 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCA 784642 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| |||||||| || | || || ||||| || || || ||||||||| Sbjct 784641 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 784582 Query 68367 TCTTGAATCTTTG 68379 |||||||||| || Sbjct 784581 TCTTGAATCTGTG 784569 >seq5 Length=1228443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||| | |||||||||||||| ||||| || || ||||||||| Sbjct 410199 TATCGCCACAACATGTAGTCCAAGGGGGTCATGTCCAAGTGGTGATCGATGTGGTGGAAA 410140 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC 225084 || |||||||| ||||| | ||| || |||||| |||||||| || Sbjct 410139 GCGTGCTGGGCAACGTAACCGATGACCAAGTTGGGGTGCTTCCAGAC 410093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621547499280