Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 170 4e-37 seq22 93.3 8e-14 >seq15 Length=506865 Score = 170 bits (188), Expect = 4e-37 Identities = 293/409 (72%), Gaps = 21/409 (5%) Strand=Plus/Plus Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||||||| || |||| || ||||||||||| || ||||| ||||| Sbjct 482773 GCATCCATCTTCTGGCTCAAGAAGCGAGGTCTC-ATGCCCGGACTGACGTTCTCCAACGA 482831 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||||||| | | |||||||| || || | |||||||| |||||||| ||| | ||| Sbjct 482832 ACTCATCTCCCGAGACGAGGGTCTCCACACCGACTTTGCATGCCTCCTCTTC---ACCCA 482888 Query 42872 CCTCAGGC-ACAA--GCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGG 42927 ||| | | || | || | || | | || || || ||||||| || ||||| | Sbjct 482889 CCTGAAACGACGACCGCACCCGGA-AACCGTGGAACG---CATCATCCGTGAAGCCGTCG 482944 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 | |||| || ||||| ||| | | |||||||| || || ||||||||||| | Sbjct 482945 ACCTCGAATGTGAATTCCTGACGGACGCCCTGCCCGTCTCGTTGATCGGCATGAACGAAA 483004 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCT 43045 | ||||||||| ||||||| | || ||||||||| | ||| || || ||| | || Sbjct 483005 AGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTCGTCGCC--CTTGGAAA 483062 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | | | |||||| | ||| |||||||||||||| ||||| ||| | |||| Sbjct 483063 CGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAACATTTCGCTCCAGGG 483122 Query 43106 CAAGACCAACTTTTTCGAG--AAGCGCGTC-GCCGACTACCAGGTCAAG 43151 || |||||||||||||| | ||| ||| ||| ||| ||| ||| || Sbjct 483123 TAAAGCCAACTTTTTCGAGTCACGCGTGTCGGCCTACT-CCAAGTCGAG 483170 >seq22 Length=364263 Score = 93.3 bits (102), Expect = 8e-14 Identities = 214/318 (67%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 |||| || ||||| |||||||| ||||||||||| || | |||||| || | Sbjct 67487 GCGAAAGCACCGGGTCGCTTGTTACCTCCCTGGTCGACG----TATCGAGCAGTCGCATC 67432 Query 245191 G-AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 | ||| | || || | || || || || || |||| |||||||| || ||||| | Sbjct 67431 GTAAGCT-CGAAGCATGGGGACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACG 67373 Query 245250 CGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGA 245309 |||||| | | || |||| ||| || || | ||||| || |||||||| | Sbjct 67372 ATCCCTTGGCTCGGATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCA 67313 Query 245310 GGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCA 245369 ||| || |||||| |||||| || ||||| || ||| |||||| || || Sbjct 67312 TGGCACAAGTCTTGAGGGTGTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCA 67253 Query 245370 GAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGT 245429 ||||| || |||| ||| || | || | | | |||||||| || || ||||| Sbjct 67252 AGAAGCACGAAGACAACTGAGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGT 67193 Query 245430 GGGTAAAGTAGCGGCTCG 245447 |||||||||| | ||||| Sbjct 67192 GGGTAAAGTATC-GCTCG 67176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338326486240