Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 140 8e-28 >seq2 Length=1446810 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || ||||| ||||| | || ||||| ||||| Sbjct 440421 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAA 440362 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || || | ||||| || || ||||||||||| || | |||||| || Sbjct 440361 GATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATT 440302 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 440301 GTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGAC 440242 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 440241 GAAAATCTGCAT 440230 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||||| ||| || || |||||||| | || || || || ||| Sbjct 440192 TCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAG 440133 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 |||| ||||| || | || || || || || |||||||| || ||| || || || Sbjct 440132 ATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTT-GCTCTTGACATT 440074 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || || || ||||| | ||||| ||||| ||||||| |||||||| Sbjct 440073 GTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 440014 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 440013 GAAGATCTGCAT 440002 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || ||||| || || || ||||| |||||||||| || || || ||||| Sbjct 440621 GTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATG 440562 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || | || || || || |||| || || || ||||| Sbjct 440561 CCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCA 440502 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| ||||||| ||||| || || || ||||| Sbjct 440501 AGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653281540172