Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq21 93.3 5e-14 >seq2 Length=1446810 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||||| ||||| |||| || |||||| ||||| |||||||| | Sbjct 440685 ACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGA 440626 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || | |||||| || ||||| || | || |||||||||| || Sbjct 440625 CAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGG 440566 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || ||||||||| ||| | || | |||| | | | ||||| || || | Sbjct 440565 GATGCCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGA 440507 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || | |||||| |||||||||||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || | ||||| || |||| || |||||||| ||||| || Sbjct 440193 CTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 440134 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 440133 GATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 440074 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || || || || || || | ||||| || || || || | ||||| || Sbjct 440073 GTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 440014 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 440013 GAAGATCTGCAT 440002 >seq21 Length=401567 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| ||||| ||||| ||| |||||| ||||| ||||| || | || || || | || Sbjct 241806 CAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTTCGGCCATC 241865 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || ||||| || | |||||||||||| | || | || |||||||| Sbjct 241866 TTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 241925 Query 42116 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| || |||| ||| | | | ||||| || || || |||| ||||||| Sbjct 241926 CTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGG 241984 Query 42175 TTTTGCCCGTTAG 42187 | || ||||| || Sbjct 241985 TCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212297528160