Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 122 9e-23 seq2 87.8 2e-12 >seq15 Length=506865 Score = 122 bits (134), Expect = 9e-23 Identities = 242/354 (68%), Gaps = 7/354 (2%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| ||||||||| |||||| | || || || ||||| || || ||||| ||| Sbjct 482806 ATGCCCGGACTGACGTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCCACACCGAC 482865 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG 52601 ||||| |||||| || || | | | ||| | | | | |||| || | Sbjct 482866 TTTGCATGCCTCCTCTTCA---CCCACCTGAAACGACGACCGCACCCGGAAACCGTGGAA 482922 Query 52602 AGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTC 52661 |||| || || || || | ||||| || || | |||| ||| ||||| ||| Sbjct 482923 CGCATCATCCGTGAAGCCGTCGACCTCGAATGTGAATTCCTGACGGACGCCCTGCCCGTC 482982 Query 52662 GAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGT 52721 | || | |||||||||| || ||||||| ||||||| ||| || || |||||| Sbjct 482983 TCGTTGATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGT 483042 Query 52722 CTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTAT 52780 ||| | || || || | | ||| || | ||||| | ||| ||||| || ||||| Sbjct 483043 CTGCTCGTCGCCCTTGGAAACGACAAGGTG-TACAACGATACCAACCCGTTCGACTTTAT 483101 Query 52781 GAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG--AAGCGAGTCGGC 52832 | | ||||||||||| |||| || |||||||||||||| | ||| |||||| Sbjct 483102 GGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGC 483155 >seq2 Length=1446810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||||||| |||||||| || || | | | |||||||| ||||||||||| || | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || || |||| |||| | || || ||||| || || Sbjct 440624 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGG 440565 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || |||| || | ||||| | ||||| | Sbjct 440564 ATGCCTTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCGATAGTGTCCGAGGACTCGA 440507 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||| || || |||| || || ||||| || ||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261940957280