Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 seq21 105 6e-18 seq15 96.9 3e-15 seq4 93.3 4e-14 >seq2 Length=1446810 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || ||||||| ||||| || | || || || || || || ||||| ||| Sbjct 440456 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 440397 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||||||| |||||||||| ||||| || || || Sbjct 440396 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 440337 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| ||| || || | | |||| |||||||| || ||| Sbjct 440336 ATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACT 440277 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| ||||| || || ||||||||||| Sbjct 440276 TCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | || | ||| || || || || || |||||||| Sbjct 440000 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 439941 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| ||||||||| |||||||||| |||||||| ||||| Sbjct 439940 AGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 439881 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||||||| ||||| Sbjct 439880 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACC 439821 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 |||| || | || || ||||| ||||| Sbjct 439820 TCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||| ||| | || || || || ||||| || ||| Sbjct 440198 GTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCA 440139 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||||||||||||| || ||||| || |||||||||||| ||| || |||| Sbjct 440138 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTG 440079 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | ||||||||| | ||| | || || ||||||| || Sbjct 440078 ACATTGTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTC 440019 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 440018 TTGACGAAGATCTGCAT 440002 >seq21 Length=401567 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | ||| ||||| || | || ||||| || ||||| ||||| || Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCCGAGGACTCGAC 241970 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||| | || || || || || Sbjct 241971 CTCGAGGGTGATGGTCTTACCCGTGAG 241997 >seq15 Length=506865 Score = 96.9 bits (106), Expect = 3e-15 Identities = 245/362 (68%), Gaps = 23/362 (6%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || ||||| |||||| || ||||| ||||||| || || |||||| || Sbjct 482806 ATGCCCGGACTGACGTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCCACACCGAC 482865 Query 47283 TTTGCCTGTCTCTACTACAAC-ACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTC-A 47340 ||||| || ||| || || | || || ||| | | || | ||||| | Sbjct 482866 TTTGCATGCCTCCTCTTCACCCACCTGAAACGACGACC----GCACCCGGAAACCGTGGA 482921 Query 47341 GCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG-GAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||| | |||||||||| | | || ||| || || | | || || |||||| Sbjct 482922 ACG-CATCATCCGTGAAGCCGTCGACCTCGA-ATGTGAATTCCTGACGGACGCCCTGCCC 482979 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | || || | || ||||||| || | ||| | ||||||| || |||||||| Sbjct 482980 GTCTCGTTGATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGAT 483039 Query 47460 CGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCAC---ACCGAGAATCCATTC 47513 || |||||||| || ||| | |||| | ||| || ||| || || ||| Sbjct 483040 CGTCTGCTCGTCGCCCTTGGAAACGA---CAAGGTGTACAACGATACC---AACCCGTTC 483093 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG--AAGCGCGTCG 47571 || |||||| | |||||||||||| |||| || |||||||||||||| | ||| |||| Sbjct 483094 GACTTTATGGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCG 483153 Query 47572 GC 47573 || Sbjct 483154 GC 483155 >seq4 Length=1260884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || |||||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 784713 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 784654 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 784653 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 784594 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 784593 ATACCTTCCTTGTC 784580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500360161760