Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq21 87.8 2e-12 >seq2 Length=1446810 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||| || || || ||||| | |||| | || ||||| || Sbjct 440660 TGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTGC 440601 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| ||||||||||| ||||| |||||||| || || ||||| || Sbjct 440600 TTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAATCTTG 440541 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||| || ||||||||||| || || | ||| || ||||| Sbjct 440540 GACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGTC 440481 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| |||||||| Sbjct 440480 AACGTCTTCACAAAGATTTGCAT 440458 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| ||| || || || ||||| |||||||| ||||| || ||||| Sbjct 440003 ATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCC 439944 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| | ||| || | || ||||| ||| | |||||||||||||| || || Sbjct 439943 GAGAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGA 439884 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || |||| || | ||||| || || ||| Sbjct 439883 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCG 439824 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 || |||||||| | || || ||||| ||||| Sbjct 439823 ACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||| ||||| || || ||| | |||| ||| || | || Sbjct 440432 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGC 440373 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||||||||||||| ||||| || || || ||||| || || || Sbjct 440372 TTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTG 440313 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || || || |||||||| || | || || ||||| Sbjct 440312 GATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTA 440253 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| ||||| Sbjct 440252 AGAGTCTTGACGAAAATCTGCAT 440230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || ||||| || | ||||||||||||||||| |||||||||||||| || Sbjct 440899 ATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGGTCGGGCGGAATGCCTTCCTT 440840 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || || |||| || | || | ||||| || || |||||||| | ||| | Sbjct 440839 GTCTTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCCGACGATTCGACTTCCAAAGTGA 440781 Query 45304 CCGTTTTGCCGGTTAGAGT 45322 || |||||||| | ||| Sbjct 440780 TGGTCTTGCCGGTCAAAGT 440762 >seq21 Length=401567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||||||||| || | |||| || || ||||| || || || || || Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| || | || || || ||| | |||||||| |||||||| ||||| Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | || | |||||| || |||||||| Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGAC 241970 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||||| || | || || || || || Sbjct 241971 CTCGAGGGTGATGGTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002781897040