Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 seq21 95.1 1e-14 seq15 93.3 4e-14 seq4 84.2 2e-11 >seq2 Length=1446810 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| |||| || || || | Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | ||| || |||| || || ||||| || |||||| ||||| Sbjct 440290 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTAT-CCCGCCTGACCA 440348 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||||| || || | || ||||| ||||||||| Sbjct 440349 GCAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAA 440408 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || |||| ||||| ||||| ||| | || || Sbjct 440409 CATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 440456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || |||||| | || |||||| | | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | || | | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 440062 GATACAATCGACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACC 440119 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| |||||||| |||| || || ||| |||||||| Sbjct 440120 AGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACA 440179 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| |||||||| |||| ||||| |||| || Sbjct 440180 ACATTCAAAAGGAGTCGACTCTGCACCTGGTCCT 440213 >seq21 Length=401567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 |||||||| || ||||||||| |||| |||||| || | |||| | | | |||| | || Sbjct 241997 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 241939 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGG 38382 || |||| ||||| || || || |||||| ||||| ||||| | || | ||| | Sbjct 241938 GTCCAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGATTGATCTTCGCCG 241880 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442 |||| ||||| || || | || ||||| ||||||||||| || ||||| | || Sbjct 241879 GCAAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCT 241820 Query 38443 TGCATTTGGT 38452 |||| ||||| Sbjct 241819 TGCACTTGGT 241810 >seq15 Length=506865 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| | | ||| || |||||||||| | ||||||||| |||||| || Sbjct 482489 GTAGGTGTCGATCAAGAGCGAGTAGGTTTCCGAGTGAATGTTCTCCATCATGATTTGGAA 482430 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||| || || ||| | || ||||| | ||| |||||||| || || Sbjct 482429 ACCGTAGAAGAACTTGGCTTCGGCGCATTGAACTTCGGACGAGAATCGCTCGACGAGGTT 482370 Query 133287 TTCGTTGACGATGCCGTCG 133305 |||||||||||| |||||| Sbjct 482369 TTCGTTGACGATACCGTCG 482351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 249/374 (67%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 ||| ||||| || | ||| |||| | |||||| |||||| || || ||||||| Sbjct 483141 CTCGAAAAAGTTGGCTTTACCCTGGAGCGAAATGTTTTCCATAAAGTCGAACGGGTTGGT 483082 Query 132687 TGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 |||||| |||| || | | ||| |||||||||| | ||||| |||||| Sbjct 483081 ATCGTTGTACACCTTGTCGTTTCCA--AGGGCGACGAGCAGACGATCGGCGACGAACCGA 483024 Query 132745 ATGTATTGCGACATGG---TTTCGCAATTAAGTCCCAGCAGACGC-ACCGGCAGCGCTTC 132800 ||||| || ||||| ||||| || | || | || ||| || ||||| || || Sbjct 483023 ATGTACTGGCACATGAGCTTTTCG---TTCATGCCGATCA-ACGAGACGGGCAGGGCGTC 482968 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT---TTCCCTAACGCGCGC 132857 || || || |||| | |||| || || || ||| |||| ||| | Sbjct 482967 CGTCAGGAATTCACATTCGAGGTCGACGGCTTCACGGATGATGCGTTCC---ACGGTTTC 482911 Query 132858 CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 || | ||| ||| | || || |||| | | ||| ||||||||| || | || Sbjct 482910 CGGGTGCGGTCGTCGTTTCAGGTGGGTGAAGAGGAGGCATGCAAAGTCGGTGTGGAGACC 482851 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||||| | ||| |||||||||||| ||| |||| ||||||||||| || || || || Sbjct 482850 CTCGTCTCGGGAGATGAGTTCGTTGGAGAACGTCAGTCCGGGCATGAGACCTCGCTTCTT 482791 Query 132978 GAGCCAAAATATGG 132991 |||||| || |||| Sbjct 482790 GAGCCAGAAGATGG 482777 >seq4 Length=1260884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || ||| | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 784580 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 784639 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || ||| | ||||||||||||||| ||||| |||| |||| ||||| || Sbjct 784640 GATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 784699 Query 38457 CGTTTGAGAGGCGG 38470 || ||| |||| || Sbjct 784700 CGATTGCGAGGTGG 784713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172337340160