Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq21 145 2e-29 seq4 105 1e-17 >seq2 Length=1446810 Score = 154 bits (170), Expect = 3e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 || |||||| | ||| || || ||||| || ||||| |||||||| | |||| |||| | Sbjct 440673 TCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAG-GTTCGAC 440615 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 | || || | |||||| || |||||||| | ||||| ||||| || || |||||||| | Sbjct 440614 CGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCT 440555 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 |||| ||||| || |||||| || || || |||||||| || ||||||||||| | Sbjct 440554 TGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGA 440495 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| ||||| || || || || | |||||| Sbjct 440494 TCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || |||||||| ||||| || || || || |||||||| | || |||| ||||| Sbjct 439986 CAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGACCATC 439927 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || |||||||| | |||||| || || |||||||| || || ||||| Sbjct 439926 TTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTC 439867 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||| || || || |||||||| ||| || || || || | || Sbjct 439866 CTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACCTCGAGAGTGATGGT 439807 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACA 195133 |||||| || | ||| | | ||| || Sbjct 439806 CTTTCCGGTAAGAGTCTGTTCGAGCA 439781 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || || || || ||||| |||| ||| |||| ||||||||||||||||| || Sbjct 440426 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCA 440367 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | |||||| ||||| || || || || || || || || || || || Sbjct 440366 GCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTC 440307 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||||||||| ||| ||||| ||||| | |||||||| || | ||| Sbjct 440306 ACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTC 440247 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 440246 TTGACGAAAATCTGCAT 440230 Score = 127 bits (140), Expect = 5e-24 Identities = 128/164 (78%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 194960 TATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || ||||||| | |||| || || |||||||| | |||||| || || ||||| | |||| Sbjct 440924 TACTGTAATCAGACAAG-GTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGT 440866 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| || ||||||||||| |||||||| || || ||||||||| ||||| ||| Sbjct 440865 TGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTG 440806 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| ||| ||||| | || | ||||| || |||||||| Sbjct 440805 TCCGACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 440762 >seq21 Length=401567 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| ||||| || | ||| | |||||||| || ||||| ||||| || | ||| || Sbjct 241797 TCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGT 241856 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||||||||||||||| || |||||||| | ||| || ||||| || || ||||| Sbjct 241857 TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCC 241916 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||||||||| || ||||||||||| || || || || Sbjct 241917 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAG 241976 Query 195099 GGTAACCGTCTTTCCTGT 195116 ||| | ||||| || || Sbjct 241977 GGTGATGGTCTTACCCGT 241994 >seq4 Length=1260884 Score = 105 bits (116), Expect = 1e-17 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 || ||| || | ||| | ||| ||||| || || || ||||| |||| |||| |||| | Sbjct 784702 TCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTTCGGC 784644 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||||||||||||||| || |||||||| | ||| || ||||| || || || ||||| | Sbjct 784643 CATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCT 784584 Query 195044 TGTCTTGAAT 195053 |||||||||| Sbjct 784583 TGTCTTGAAT 784574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480548072758