Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 129 4e-25 seq21 113 3e-20 >seq2 Length=1446810 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| ||| | || |||||||| | ||| ||| ||||| ||||| ||||| ||| Sbjct 440456 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 440397 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||||| |||| || ||||| ||||| || || || | |||||||||||| |||| Sbjct 440396 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 440337 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||| || ||||| ||| || || | ||||| || || || Sbjct 440336 ATACCCTCCTTATCCTGGATCTTGGATTTCAC--AT--TGTCGATGGTGTCCGAGGATTC 440281 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| |||| ||| || || ||||| || |||||||| || || ||||||||| Sbjct 440280 AACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATA 440229 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | |||||||||||| | || || ||||||||||| || ||||| Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | |||| | || |||| ||| |||||||| || || | ||||||||||| |||| Sbjct 440624 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGG 440565 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| |||||| ||||| || | ||||| || || ||| Sbjct 440564 ATGCCTTCCTTGTCCTGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCCGAGGACTC 440509 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| || | |||||||||||||| |||||| Sbjct 440508 GACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCATA 440457 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || ||| | |||| ||| | || || || |||||||| ||||| || Sbjct 440228 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 440169 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| | || |||||||| || || ||||| || | ||| |||||||| | || Sbjct 440168 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 440109 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||||||| ||||| ||||| || | ||||| |||| | ||| Sbjct 440108 ATCCCCTCCTTGTCCTGGATCTTGCTCTTGAC--AT--TGTCGATTGTATCACTTGACTC 440053 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| || | ||||| || |||||||||||| Sbjct 440052 GACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 440001 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| || || ||| || | ||||| ||| ||| ||||| ||||| || ||||| Sbjct 440000 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 439941 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || ||||| ||||| || || || | ||||||||| || | || Sbjct 439940 AGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 439881 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| ||||| ||||| || | ||||| || || || Sbjct 439880 ATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCCGAGGATTC 439825 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 || |||| || ||||| ||||| || ||||||| Sbjct 439824 GACCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 439790 >seq21 Length=401567 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||| |||||||| | ||| || ||||||||||| |||||||||||| |||| | Sbjct 241803 CCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTTCGGCC 241862 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || ||||| || ||||| || || | ||| |||||||| |||| | || ||||| Sbjct 241863 ATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTT 241922 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| ||||| |||||| | || | || || ||| || |||| ||| || Sbjct 241923 GTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 241982 Query 34946 GGTTTTTCCCGTGAG 34960 ||| || |||||||| Sbjct 241983 GGTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633307221072