Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-11 >seq2 Length=1446810 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | || |||| |||||| || ||||||||||| || || | ||||| Sbjct 439952 TTGTAATCCGAGAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGC 439893 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||||||||||||| |||||||| || ||||| |||||| || ||||| || Sbjct 439892 TGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCC 439833 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCT 480756 | | | || || || || || || ||||| ||||||| Sbjct 439832 GAGGATTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 439790 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||||||||| || || | ||||| || ||||| || || || ||||| Sbjct 440385 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 440326 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| ||| ||| || || || || | | | | ||| ||||| || Sbjct 440325 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 440266 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| |||||||| || Sbjct 440265 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 440233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176025780952