Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-26 seq1 134 2e-25 seq5 122 1e-21 seq22 114 2e-19 seq15 107 2e-17 >seq11 Length=827541 Score = 138 bits (152), Expect = 1e-26 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTT 1592178 ||||||||| |||||| ||||| | | || || ||| | ||||| || | Sbjct 307103 CGACATCTCCGAATGGGACGGCAAGTTTATCCAAGTTGACCAGGAGATGCTCTTCGAAAT 307162 Query 1592179 GATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTG 1592237 ||||| || |||||||| || |||||||||||| ||||||| |||||| |||||| ||| Sbjct 307163 CATCCTTGCTGCCAACTATCTGGACATCAAGCCTTTGCTCGA-CTTGGGTTGCAAGACTG 307221 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | ||||||||||||||||||||| | |||||||||||||| ||| || |||||| || Sbjct 307222 TCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTCAACATCCAGA 307281 Query 1592298 ACG 1592300 ||| Sbjct 307282 ACG 307284 >seq1 Length=1576301 Score = 134 bits (148), Expect = 2e-25 Identities = 247/362 (68%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 |||||| ||||||||||||| || || | || | || | | | ||||||||| Sbjct 1235886 GTCGGCGCCATCATCGACGGCTGCCCACCCGGGTTGACGCTCACAAACGAAGACATCCAG 1235827 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 ||| | || || || ||||||||| ||| | |||| ||||| | ||| | Sbjct 1235826 GTCCAGCTCTCCCGCCGACGTCCGGGCCAGAGCGACATCACCACCCCGCGGAGCGAATTC 1235767 Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 ||| ||||| || ||||| || ||||| | || |||| |||||| |||| |||| Sbjct 1235766 GATTCCGTCACTATTCAGTCCGGGACGGAACATGGGGTCACCCTCGGCACGCCGATCGGG 1235707 Query 18301 CTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCG 18360 ||| | || ||| || || ||||| |||||| |||| | | | ||| Sbjct 1235706 CTCGTCGTCCAGAACAAGGATCAACGGCCGCACGACTACACCGAGACGGATTTCTTCCCG 1235647 Query 18361 CGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGC 18420 || || || |||||||| | ||||||| | |||||||||||| ||||||| || || || Sbjct 1235646 CGTCCTTCCCACGCCGATTTCACCTACCTCGCCAAGTACGGCGTCAAGGCTTCCTCCGGT 1235587 Query 18421 GGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAG 18480 || ||||| | || || || || || || ||| ||||||||||| ||| | || || Sbjct 1235586 GGTGGCCGTGCCTCGGCGCGGGAAACGATCGGGCGTGTCGCCGCCGGTGCGATTGCGGAA 1235527 Query 18481 AA 18482 || Sbjct 1235526 AA 1235525 Score = 102 bits (112), Expect = 1e-15 Identities = 115/149 (77%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 19039 GCCAAGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA--G 19095 ||||||| ||| || |||||||| | || ||||| || ||| |||| || | Sbjct 1235280 GCCAAGAACGACTCGATGGGCGGCACCATCACCTGCGTCATCCGGAAC-TGCCC-CATGG 1235223 Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155 |||| |||||||| ||||||||||| ||||||||| ||||| ||||| ||||| || | Sbjct 1235222 GCCTGGGCGAGCCATGCTTTGACAAACTCGAGGCCGTCCTCGCGCACGCGATGCTCTCCA 1235163 Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGGC 19184 ||||| ||||||| || |||||||| ||| Sbjct 1235162 TCCCGTCCACCAAAGGGTTCGAGATCGGC 1235134 >seq5 Length=1228443 Score = 122 bits (134), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || ||||||||||||||| |||| || Sbjct 348499 GCTTGGAAAGCTCTCCGGGAAGGATCAATCGGCAGGCGGTCTGGATCTCTCGCGACGAGA 348440 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || ||||| || |||| | || || | | |||| || |||| | Sbjct 348439 TGGTGGATCGGTTGTTGTAGACGGCCAACTTGGATGCTTCAGCGGCGATTCGCTCGAAAA 348380 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| ||| || ||||||| || ||||| | |||||||||||| || |||||||| Sbjct 348379 TGTCGGAGACGAAAGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 348320 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| |||||||||||| | |||||||| || Sbjct 348319 GGACCTGCTTGAGGACCTTGTAGATGTAAGACGAGTAGGA 348280 >seq22 Length=364263 Score = 114 bits (126), Expect = 2e-19 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTG---TCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 |||||||||||| || || || |||| ||| | || |||||||| |||| || || Sbjct 67458 CTGGTCGACGTATCGAGCAGTCGCATCGT--AAG-CTCGAAGCATGGGGACGATACCATT 67402 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || | |||||||| || || | ||| | || ||| || | ||||| | || Sbjct 67401 CGAGTACCCGTTGGTTCCGGCAATGTACGATCCCTTGGCTCGGATGTTGTGAATGTTCAA 67342 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || ||||| || | |||||||| | || || ||||| ||||||||||| || Sbjct 67341 TCCAATACCGCCCGCAGTTTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATTCC 67282 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| ||||||||| ||||||| | || | |||||||| || || ||||| | ||| Sbjct 67281 CTCAATCGAGTCGTCCTTCATTGCGACCAAGAAGCACGAAGACAACTGAGGGTGAGGCGT 67222 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| | || |||| Sbjct 67221 ACCGGCGTTGAACAAGGTCGGCG 67199 >seq15 Length=506865 Score = 107 bits (118), Expect = 2e-17 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 |||| || ||||| ||| | |||||| |||||||||||||| || |||| ||| Sbjct 483174 GACGCTCGACTTGGAGTAGGCCGACACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGAG 483115 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 ||| || ||||| | ||||||||||| ||||| ||| ||| ||| || Sbjct 483114 CGAAATGTTTTCCATAAAGTCGAACGGGTTGGTATCGTTGTACACCTTGTCGTTTCCAAG 483055 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 | ||||||| || |||||||| ||| ||||||||||||||||| ||||||| Sbjct 483054 GGCGACGAGCAGACGATCGGCGACGAACCGAATGTACTGGCACATGAGCTTTTCGTTCAT 482995 Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| | || || ||||| | || ||| || || |||| |||||||| || Sbjct 482994 GCCGATCAACGAGACGGGCAGGGCGTCCGTCAGGAATTCACATTCGAGGTCGACGGCTTC 482935 Query 868924 GACGATGAT 868932 |||||| Sbjct 482934 ACGGATGAT 482926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133127213458