Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 149 6e-31 seq4 107 2e-18 >seq2 Length=1446810 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | ||||| || || || || || ||||| || || | Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || ||||| || Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| || ||| ||||||| ||| | |||| ||||| ||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || |||||||| ||||||||||| || || Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || | ||||| || | | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||| || ||| | || || || ||| Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| ||||| || ||| |||| | | |||| ||||| Sbjct 440182 ATTCAAAAGGAGTCGACTCTGCACCTGGTCCTCAGGCTGCGAGGAGG 440228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || | ||||| ||| | | ||||| | || | || || Sbjct 440768 ACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTCAAGTCG 440827 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| ||||| || || ||||| || ||||| |||||||||||||| || Sbjct 440828 AAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCCGGAAAG 440887 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| |||| ||| || | | |||| ||||| Sbjct 440888 CAGTTGGAAGATGGCAGGACCTTGTCTGATTA 440919 >seq4 Length=1260884 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAAC 24848 |||| |||||||| ||||| || || || || || || || |||||||| ||||| || | Sbjct 784572 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 784631 Query 24849 AGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 |||| || ||| ||| | |||| || || ||||| || ||||| ||||| | |||| Sbjct 784632 AGCTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACT 784691 Query 24909 TGGTGTTGCGATTGCGCGGAGG 24930 |||| ||||||||||| || || Sbjct 784692 TGGTCTTGCGATTGCGAGGTGG 784713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897183844720