Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-26 seq11 118 2e-20 seq15 100 5e-15 seq22 93.3 7e-13 >seq5 Length=1228443 Score = 138 bits (152), Expect = 2e-26 Identities = 180/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 1485480 GACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCG 1485539 ||||||||||||||| || |||| ||||||| ||| || || ||| | | ||||| || Sbjct 348528 GACGGCCTTGGTACCTTCAGAGATGGCGTGCTTGGAAAGCTCTCCGGGAAGGATCAATCG 348469 Query 1485540 CACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG 1485599 ||||||||||||||| || | ||| ||| || ||||| | |||| Sbjct 348468 GCAGGCGGTCTGGATCTCTCGCGACGAGATGGTGGATCGGTTGTTGTAGACGGCCAACTT 348409 Query 1485600 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACAT 1485659 | || || | | |||| || |||| |||||| ||| || ||||||| ||| ||||| Sbjct 348408 GGATGCTTCAGCGGCGATTCGCTCGAAAATGTCGGAGACGAAAGAGTTCAAGATGGACAT 348349 Query 1485660 CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGA 1485719 | ||||||||||| || ||||||||| ||||||||||| |||||||| | | || Sbjct 348348 GGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAGATGTAAGA 348289 Query 1485720 CGAGTACGA 1485728 |||||| || Sbjct 348288 CGAGTAGGA 348280 >seq11 Length=827541 Score = 118 bits (130), Expect = 2e-20 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| || | ||||| || |||||||| || ||||||||||| | ||||| ||||| Sbjct 307152 CTCTTCGAAATCATCCTTGCTGCCAACTATCTGGACATCAAGCCTTTGCTCGACTTGGGT 307211 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || |||||| | |||||||||||| | |||||||| ||||| ||| || Sbjct 307212 TGCAAGACTGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTC 307271 Query 2035749 AACATCAAGTACG 2035761 |||||| || ||| Sbjct 307272 AACATCCAGAACG 307284 >seq15 Length=506865 Score = 100 bits (110), Expect = 5e-15 Identities = 178/255 (70%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||||| || ||||| || | |||||| |||||||||||||| || |||| || Sbjct 483175 TGACGCTCGACTTGGAGTAGGCCGACACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGA 483116 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCC 794008 |||| || ||||| | ||||||||||| ||| ||| ||| ||| || Sbjct 483115 GCGAAATGTTTTCCATAAAGTCGAACGGGTTGGTATCGTT--GTACACCTTGTCGTTTCC 483058 Query 794009 GAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 || ||||| ||||| || ||||||||||| |||||||||||||||||| || Sbjct 483057 AAGGGCGACG--AGCAGACGATCGGCGACGAACCGAATGTACTGGCACATGAGCTTTTCG 483000 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 ||||||||||| | || |||||||| | || | | || || |||| |||||| Sbjct 482999 TTCATGCCGATCAACGAGACGGGCAGGGCGTCCGTCAGGAATTCACATTCGAGGTCGACG 482940 Query 794127 GCCTC---GATGATG 794138 || || ||||||| Sbjct 482939 GCTTCACGGATGATG 482925 >seq22 Length=364263 Score = 93.3 bits (102), Expect = 7e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 2071772 CGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCG 2071831 |||| || || ||||||| ||| ||| || || |||| ||||| | | || Sbjct 67753 CGTCGAAAGCCTTGCCGTGGACTTCGGACAGACCCGGACACTCGTTGGGGCACATCAACG 67694 Query 2071832 ACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAA 2071891 |||||||||| | | | | || || ||||| |||| |||| |||| || |||| | Sbjct 67693 CCCAGTCGCCGTCCGCCTCGACACGTCGCATGAACATGTCGGGGATCCAGAGCGCGTAGA 67634 Query 2071892 AGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGA 2071951 | || || || || ||| || |||||||||||||||||| || |||| |||||| Sbjct 67633 ACAGGTCTCGGGCTCGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATGAAGTCGA 67574 Query 2071952 CGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 || || |||||||| || || |||||| Sbjct 67573 AGACATCCGCGTGCCAGGGTTCGAGGTAG 67545 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 431099 CGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCG 431158 ||| || || ||||| |||| || ||||||||||||||||||||||| ||||||||||| Sbjct 38393 CGGTCGAGAAGGTCTGATCGATACCGCCGTCAAGACGGCCGAGACGGGTTACATCCAGCG 38334 Query 431159 TCGGTGCATCAAATCGATGGAG 431180 ||||| | ||| |||||||| Sbjct 38333 TCGGTTGGTGAAAGCGATGGAG 38312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238528282486