Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 >seq2 Length=1446810 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || || || || || || || ||| | ||| ||| | Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || |||||| || || |||||| | || || ||| Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | || || || ||| ||||||||| ||| || |||| |||||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||||| |||| ||| |||||||||| || Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || || || || || ||| | ||| ||| | | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| || || || || | || || ||| Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| || || |||||||| |||| | ||| | | ||||||||| Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || ||||| |||| | || ||||||| || Sbjct 440182 ATTCAAAAGGAGTCGACTCTGCACCTGGTCCTCAGGCTGCGAGGAGG 440228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876440262986