Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 147 4e-30 >seq2 Length=1446810 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || | || || | ||||||||| || || || || || || || || | Sbjct 440230 TACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGG 440171 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| |||||||| || || || ||||||||||| | || || || || |||| Sbjct 440170 AGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAG 440111 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||| ||||| || ||||| || || |||||| | | || Sbjct 440110 GAATCCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTCGATTGTATCACTTGACTCG 440052 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 440051 ACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| ||| |||| ||| |||||||| ||||| || ||||| || || ||||| | Sbjct 440686 TACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCG 440627 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| |||||| || | || ||||| || ||||| | | ||| || || || | Sbjct 440626 ACAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCG 440567 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| | || ||||| || || || || | || | Sbjct 440566 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGA 440507 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || |||||||| || ||||||||||| ||||| || ||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 |||||||| | | || || ||||| | || ||||| |||||||| | || ||| || Sbjct 440919 TAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGG 440860 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || || || || |||||||| ||||| ||||| | || || || |||||||| || Sbjct 440859 TCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCCGAC 440800 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCT 82794 | ||| ||||||||||| || |||||||| ||||| |||| Sbjct 440799 GATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 440760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826269105086