Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq22 131 2e-25 seq15 118 1e-21 seq2 105 6e-18 seq21 98.7 1e-15 seq5 84.2 2e-11 >seq22 Length=364263 Score = 131 bits (144), Expect = 2e-25 Identities = 228/332 (69%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 148263 ACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCA 148322 || ||||| || || ||||||||||| || || || | |||||| || ||||||| Sbjct 68663 ACGACCTGGAAATCACCGGCGAGCACACGTCGGGAGTAAATGTTGCTGGTGTACGGTTCG 68604 Query 148323 AACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGC 148382 || | ||||| ||||| ||| || | ||| | ||| || |||||| || ||||| Sbjct 68603 AAACATTCGTTCCAGCCCAGAATTTGTGAGGTGGATGCAGTCGGCATGGGAGCGACCAGG 68544 Query 148383 AGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC 148442 ||||||||||| | || || || ||| ||||| | ||||| |||||||| Sbjct 68543 AGCGAGTTGCGTAGGCCAGTCTTGGCGATCTTGGCCTTCAAGGTTGCCCAATCCCAGAGG 68484 Query 148443 GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCC 148502 |||||||| || | | ||| | ||||||||||| |||| | || || ||| ||| Sbjct 68483 GGCGACGGGGTAATGCCCCAAAGGTCGTACTGCAACTTGCCTTGACTGGCCGGGGAGCCT 68424 Query 148503 TCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCG 148562 ||||| | ||| || || | | | | |||| || | || |||||||||| || Sbjct 68423 TCGTAGGTCTGGTAAGGGCCCTCCACTTCTGCCATCTCAGAAGACGACTCGAGCGCGGCG 68364 Query 148563 TAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 | ||| || || || ||||||| |||||| Sbjct 68363 TGGTAGATGGTTTCAAAAATTTGCACGTTGAG 68332 >seq15 Length=506865 Score = 118 bits (130), Expect = 1e-21 Identities = 259/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 |||||| ||| |||||||| | ||| |||| | ||||||||| | |||||| |||||| Sbjct 483149 ACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGAGCGAAATGTTTTCCATAAAGTCGAAC 483090 Query 120424 GGGTTGCTCGCGT--TAAAGTATTTCGGCTGGCCCAACTG-TACGAGCAGTCGGTCCGCT 120480 |||||| | ||| || | | ||| | |||| | |||||||| || || || Sbjct 483089 GGGTTGGTATCGTTGTACACCTTGTCGTTT---CCAAGGGCGACGAGCAGACGATCGGCG 483033 Query 120481 ACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAAC 120540 || ||| |||||||| ||||||| || |||||||||| | ||||| || |||| Sbjct 483032 ACGAACCGAATGTACTGGCACATGAGCTTTTCGTTCATGCCGATCAACGAGACGGGCAGG 482973 Query 120541 GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTG 120600 || ||| | || || || | ||| || || || || || ||| | | | Sbjct 482972 GCGTCCGTCAGGAATTCACATTCGAGGTCGACGGCTTCACGGATGAT-GCGTTC-CACGG 482915 Query 120601 TGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAAAGTCCGTGTG 120659 | ||||| | || ||| | | || | | || ||||| |||||||| ||||| Sbjct 482914 TTTCCGGG--TGCGGTCGTCGTTTCAGGTGGGTGAAGAGGAGGCATGCAAAGTCGGTGTG 482857 Query 120660 CAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTT 120719 || |||||||| || || || || |||||| |||||||| |||||||||| ||| Sbjct 482856 GAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAACGTCAGTCCGGGCATGAGACCTCG 482797 Query 120720 CGTCTTGATGTAGAATATGG 120739 | |||||| |||| |||| Sbjct 482796 CTTCTTGAGCCAGAAGATGG 482777 >seq2 Length=1446810 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || |||||||| || || ||| |||||| | Sbjct 440663 AAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACC-GTCCTCCAA 440605 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | ||| ||||||||||| ||||||||||||||||| || Sbjct 440604 CTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAAT 440545 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || ||| || || | ||||| || || || Sbjct 440544 CTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCC 440485 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 440484 GGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| | || | | | || ||||| Sbjct 440435 AAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCA-TCTTCGAG 440377 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | || |||||||| || ||||| || ||||| || ||| Sbjct 440376 CTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGAT 440317 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | || | ||||| | || || || |||| ||||| || || || Sbjct 440316 CTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCC 440257 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || |||||||||||||| Sbjct 440256 GGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| || | || | ||||||||||| ||||| || || ||||| Sbjct 440157 GTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTT 440098 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | || || | | ||| || || | ||||| Sbjct 440097 GTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCACTTGACTCGACTTCCAAGGTGAT 440038 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||| || || ||||| |||||||| Sbjct 440037 TGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 >seq21 Length=401567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| || | || | | | || ||||| Sbjct 241813 AAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTTCGGCCA-TCTTCGAG 241871 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || | ||||||||||| || ||||||||||||||||| ||| Sbjct 241872 CTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGAT 241931 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || ||| || |||| ||||| ||| || || Sbjct 241932 CTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACC 241991 Query 133634 GGTCAG 133639 || || Sbjct 241992 CGTGAG 241997 >seq5 Length=1228443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 || |||||||| ||| |||| || |||| | ||||| |||||||||||||| ||| Sbjct 656669 GGGTTCCACGTTCACCAGTTCGGTGACAACTCGAACGGTTGCACCTCCGCCGGTCCCCAC 656610 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 |||||||||||||| ||||||| | | | ||||| || | ||||| |||||| Sbjct 656609 TTCAACCCCACCGGTGTCAACCACGGTGACCGAACCGCCGAGGTCAGGCACGTTGGTGAC 656550 Query 116596 CTGGGCAAC 116604 |||| ||| Sbjct 656549 TTGGGTAAC 656541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420352835760