Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 116 9e-21 seq4 89.7 1e-12 >seq2 Length=1446810 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || ||||| |||||||| | ||||| || || ||||| |||| Sbjct 440473 AAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCGGACACTATCGACAAT 440532 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || ||||| || ||| ||| ||| | | |||||| Sbjct 440533 GTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAGCAACGGTTGATCTTC 440592 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| || || | || ||| | ||||||||| | ||||| |||||| Sbjct 440593 GCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAACATTCAGAAGGAGTCT 440652 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | |||||| || | ||| Sbjct 440653 ACCCTGCACTTGGTTTTGCGATTGCGA 440679 Score = 107 bits (118), Expect = 5e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||||||||| ||| || ||||| | || || ||| Sbjct 440768 ACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTCAAGTCG 440827 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| ||| ||| ||| || | ||||| ||||||||| Sbjct 440828 AAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCCGGAAAG 440887 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 |||||||||||||| ||||| ||| | ||||||| Sbjct 440888 CAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 440921 >seq4 Length=1260884 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||||||||| || ||||| || || ||| || || | ||||||||||| |||| Sbjct 784572 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 784631 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 || | |||||||| | || ||| |||| |||||| ||||||| ||||| ||| | ||| Sbjct 784632 AGCTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACT 784691 Query 206375 TTGTTTTGAGACTTCGA 206391 | || ||| || | ||| Sbjct 784692 TGGTCTTGCGATTGCGA 784708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819679486154