Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-21 seq22 113 6e-19 seq15 95.1 2e-13 >seq5 Length=1228443 Score = 122 bits (134), Expect = 1e-21 Identities = 176/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||||| | ||||||||||| ||||||||||| |||||| || | | | Sbjct 348280 TCCTACTCGTCTTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----A 348334 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||||||| ||||||| ||| ||||||| || ||| |||||| |||| || ||| Sbjct 348335 TC-TCCAACAAGGCCATGTCCATCTTGAACTCTTTCGTCTCCGACATTTTCGAGCGAATC 348393 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | || || |||| || |||||| || ||| ||| |||| ||| Sbjct 348394 GCCGCTGAAGCATCCAAGTTGGCCGTCTACAACAACCGATCCACCATCTCGTCGCGAGAG 348453 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||||| || ||||| | | ||| || || ||| ||||||| |||| || Sbjct 348454 ATCCAGACCGCCTGCCGATTGATCCTTCCCGGAGAGCTTTCCAAGCACGCCATCTCTGAA 348513 Query 725136 GGCACCA 725142 || |||| Sbjct 348514 GGTACCA 348520 >seq22 Length=364263 Score = 113 bits (124), Expect = 6e-19 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| || | || || ||||| ||||| | ||| ||| || |||||||| || | | Sbjct 67199 CGCCGACCTTGTTCAACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCG 67258 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| ||| ||||| ||||| ||||| ||||| |||||| || || | |||| Sbjct 67259 CAATGAAGGACGACTCGATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCT 67318 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 |||| | || ||||| || || || | ||||| | || ||| ||| | ||| Sbjct 67319 CCAAAACTGCGGGCGGTATTGGATTGAACATTCACAACATCCGAGCCAAGGGATCGTACA 67378 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || || |||||||| | || || || | || ||||||||||| | || | | | Sbjct 67379 TTGCCGGAACCAACGGGTACTCGAATGGTATCGTCCCCATGCTTCGAGCTTACGATGCGA 67438 Query 260163 CGGCGCGCTACGTCGACCAG 260182 | || || |||||||||||| Sbjct 67439 CTGCTCGATACGTCGACCAG 67458 >seq15 Length=506865 Score = 95.1 bits (104), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || || ||||| ||||| ||| || || ||||| ||||| ||||||||||||||| || Sbjct 482418 TTCTTCTACGGTTTCCAAATCATGATGGAGAACATTCACTCGGAAACCTACTCGCTCTTG 482477 Query 1456048 ATCGACACCTACGTCAAGGACCCGG 1456072 |||||||||||| |||||||||||| Sbjct 482478 ATCGACACCTACATCAAGGACCCGG 482502 Score = 89.7 bits (98), Expect = 7e-12 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||||| |||| || || | | || | ||||| || || Sbjct 482926 ATCATCCGTGAAGCCGTCGACCTCGAATGTGAATTCCTGACGGACGCCCTGCCCGTCTCG 482985 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||| | ||||||||||||||||||| || |||||||| || | Sbjct 482986 TTGATCGGCATGAACGAAAA-GCTCATGTGCCAGTACATTCGGTTC-GTCGCCGATCGTC 483043 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG--CCAACCCGTTCCCATGGA 1456700 |||||| || || || || | ||| ||| ||| ||||||||||| | | Sbjct 483044 TGCTCGTCGCCCTTGGAAACG-ACAAGGTGTACA--ACGATACCAACCCGTTCGACTTTA 483100 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACG 1456759 |||| || |||||| |||| || |||||||||||||| |||||| | | ||| Sbjct 483101 TGGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGCCTACT 483160 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| | |||||| Sbjct 483161 CCAAGTCGAGCGTCA 483175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804062563988