Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq21 109 5e-19 seq4 93.3 4e-14 >seq2 Length=1446810 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | ||||| |||| ||||||||||| || ||||| Sbjct 440193 CTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 440134 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| | |||||||||| |||||| ||| | | | Sbjct 440133 GATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 440074 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || || || || |||| ||||| || || || ||||| || || || Sbjct 440073 GTCGATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 440014 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 440013 GAAGATCTGCAT 440002 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | ||| ||||| || | ||| |||||| |||||||||||||| | | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| |||| |||| |||||| || || || |||||||| |||||||| | || Sbjct 440624 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGG 440565 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||||| ||| | | | | | ||||| || || || Sbjct 440564 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACT 440505 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || || ||||| || |||||||| || ||||| Sbjct 440504 TCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || ||| || | || | ||| ||||| || ||||||||||| | Sbjct 440000 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 439941 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || |||||||| || || || ||||| || ||||| || | |||| Sbjct 439940 AGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 439881 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | ||||| ||||| ||| Sbjct 439880 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACC 439821 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGT 35718 || | ||||| || || || || | ||| Sbjct 439820 TCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 >seq21 Length=401567 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| ||||| || || || |||||| ||||||||||| || | Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| |||||| ||| | |||| | | ||||| || || || Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGAC 241970 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||| | ||||| || |||||||| Sbjct 241971 CTCGAGGGTGATGGTCTTACCCGT 241994 >seq4 Length=1260884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | ||| ||||| || || || |||||| || |||||||| |||| | Sbjct 784713 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 784654 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 784653 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 784594 Query 35630 ACGCTCTCCTTGTC 35643 | | |||||||| Sbjct 784593 ATACCTTCCTTGTC 784580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793183015920