Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 122 9e-23 seq21 118 1e-21 seq4 86.0 6e-12 >seq2 Length=1446810 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| |||||||| |||||||||||||| || |||||||| || | ||| || Sbjct 439991 AGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGA 439932 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || || ||||| || |||||||| || || || || || Sbjct 439931 CCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCC 439872 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || ||||| || |||||||| Sbjct 439871 TTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACCTCGAGAGTG 439812 Query 134676 ATGGTTTTACCGGTTAAAGT 134695 ||||| || ||||| | ||| Sbjct 439811 ATGGTCTTTCCGGTAAGAGT 439792 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557 ||||| || | ||| | ||||||||||| || |||||||||||| || ||| | Sbjct 440445 TCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCC 440386 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || |||||||| || || || || ||||| || ||||| || ||||| || || || || Sbjct 440385 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 440326 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || ||| || ||| | ||||| || ||||| || ||||| || || Sbjct 440325 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 440266 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | ||| || |||||||| ||||| Sbjct 440265 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 || |||| | |||||| || | ||| || || || ||||| ||||||||||| | || | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || ||| || | ||| || || || || ||||| || ||||| |||||||| Sbjct 440624 AA-GGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGG 440566 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || ||||| || ||||| ||| | ||||| || || || || Sbjct 440565 GATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGAC 440506 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| || || || || || |||||||| Sbjct 440505 TTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || | | || ||||| || || || ||||||||||||||||||||| Sbjct 440228 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 440169 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| ||||| ||||| |||||||| || || || Sbjct 440168 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 440109 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||| || || || || Sbjct 440108 ATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCACTTGACTCGACT 440049 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || ||||| || || || ||||| || ||||| Sbjct 440048 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 >seq21 Length=401567 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| | ||| || | ||| | ||||| ||||| |||||||||||||| | Sbjct 241792 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 241851 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || ||||| |||||||| || ||||| Sbjct 241852 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 241911 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | ||||| || || || || Sbjct 241912 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 241971 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| ||||| || Sbjct 241972 TCGAGGGTGATGGTCTTACCCGT 241994 >seq4 Length=1260884 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| | |||||| || | ||| | || || ||||| || |||||||||||| Sbjct 784713 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 784654 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || ||||| |||||||| || || || Sbjct 784653 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 784594 Query 134607 ATGCCTTCTTTTTCTTGAAT 134626 || ||||| || |||||||| Sbjct 784593 ATACCTTCCTTGTCTTGAAT 784574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397932506480