Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=1446810 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| ||||| || || || || || || || || ||||||||| Sbjct 440456 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 440397 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||||||||| || || ||| | || | || || || || ||||| Sbjct 440396 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 440337 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||||||| ||||| | || | ||||| | || ||||||| Sbjct 440336 ATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACT 440277 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | || || || ||||| || || || || |||||| || || Sbjct 440276 TCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCATACCTCCT 440223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||| ||||| || | ||||| || || ||||| ||||| || | Sbjct 440684 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 440625 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || | ||| || |||||| | || | || || || || ||||| Sbjct 440624 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGG 440565 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| || | | || | |||||| | || || ||| Sbjct 440564 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACT 440505 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||| || |||||||||||||||||| Sbjct 440504 TCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCATA 440457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934016762288