Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq22 100 3e-16 seq15 87.8 2e-12 >seq22 Length=364263 Score = 100 bits (110), Expect = 3e-16 Identities = 478/752 (64%), Gaps = 16/752 (2%) Strand=Plus/Plus Query 105200 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 || || || ||| |||||||||| | |||||||||||||| |||||||| ||| || Sbjct 68230 AACTCGAACATGCGACACCGTCCTGTCGGTCTCGGTGTTCAAGGTCTCGCCGATACCTTT 68289 Query 105260 AT-TCTTTGTCGCCACGCATTT-GA--TTCCGACGAAGCGAAGGAAATCAATGCGCGCAT 105315 || | ||| || || || ||| || ||| |||||| || |||| | || || Sbjct 68290 ATGGCATTG-CG-CATGCCTTTCGACGGTCC--CGAAGCCCGACAACTCAACGTGCAAAT 68345 Query 105316 ATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGG 105375 ||||| ||||| || |||||||| || ||| || ||| ||| ||||||| || || || Sbjct 68346 TTTTGAAACCATCTACCACGCCGCGCTCGAGTCGTCTTCTGAGATGGCAGAAGTGGAGGG 68405 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTG 105435 || || | |||| || || || || || ||||| | | || | || | || Sbjct 68406 CCCTTACCAGACCTACGAAGGCTCCCCGGCCAGTCAAGGCAAGTTGCAGTACGACCTTTG 68465 Query 105436 GGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAA 105495 || | | || | || || |||| | | | |||| ||| ||| Sbjct 68466 GGGCATTACCCCGTCGCCCCTCTGGGATTGGGCAACCTTGAAGGCCAAGATCGCCAAGAC 68525 Query 105496 GGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTT 105555 || || || ||| ||||| | ||||| ||||| || || |||||| ||||||| | Sbjct 68526 TGGCCTACGCAACTCGCTCCTGGTCGCTCCCATGCCGACTGCATCCACCTCACAAATTCT 68585 Query 105556 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 105615 ||| || ||||| || ||||| ||||| | ||||| || || | ||||| Sbjct 68586 GGGCTGGAACGAATGTTTCGAACCGTACACCAGCAACATTTACTCCCGACGTGTGCTCGC 68645 Query 105616 GGGAGAGTTTGTGATTGTCAACAAGCATCTCG----TGGATGACCTCAAAGAGATTGGTC 105671 || || || | | ||| || || | || |||| | | | |||| Sbjct 68646 CGGTGATTTCCAGGTCGTC----TGCCCCTGGTTGTTGCGTGACTTGGTCAACCTGGGTC 68701 Query 105672 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG 105731 ||||| | | || |||||| | | || | | ||||| ||||| ||||| ||| Sbjct 68702 TCTGGGACGACGAGATGAAGAACCGAATCATCGCACACGGTGGCTCCATCCAAAACATTC 68761 Query 105732 TGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 105791 | ||||| || | ||| | ||| || ||||||||||||| ||||| Sbjct 68762 CCAACATTCCTGCAGAGTTGAAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGG 68821 Query 105792 ATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATC 105851 | |||| || | || || || || || ||| || |||||| ||| | ||| Sbjct 68822 GTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATA 68881 Query 105852 TCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGA 105911 || |||| | || ||||| ||||| | || |||||| | ||| ||||||||| Sbjct 68882 TCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGA 68941 Query 105912 AGGGTCTCAAAACGGGGATGTATTACCTCCGA 105943 | || ||||| || || ||||| ||| | ||| Sbjct 68942 AAGGACTCAAGACCGGCATGTACTACTTGCGA 68973 >seq15 Length=506865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||||||||||||||| || || ||||||||||| || ||||| || Sbjct 482785 TGGCTCAAGAAGCGAGGTCTCATGCCCGGACTGACGTTCTCCAACGAACTCATCTCCCGA 482844 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| |||||| || ||||| Sbjct 482845 GACGAGGGTCTCCACACCGACTTTGC 482870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260260483760