Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 170 6e-37 seq2 154 4e-32 >seq10 Length=857106 Score = 170 bits (188), Expect = 6e-37 Identities = 555/855 (65%), Gaps = 8/855 (1%) Strand=Plus/Plus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||| || | ||||| || |||| || || |||||||| |||||||||||| ||| Sbjct 153488 ATACCGTTGGCGTCAATGTCGAATGTGACCTCGATCTGTGGGACACCTCGTGGCGCTGGA 153547 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCG 183047 || || || | || |||| ||| | || ||||| |||| || | || Sbjct 153548 GGGATACCGGACAAGTCGAATTTACCGAGCAAGTTGCAGTCTTTGGTTCGGGCACGTTCA 153607 Query 183048 CCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACTTGC 183107 |||||| | ||||| || || | ||||| || || ||| || ||||| | || Sbjct 153608 CCTTCAAAGACTTGGATCAAGACACCGGGCTGGTTGTCGGCATAGGTCGAAAAGATTTCA 153667 Query 183108 TTTTTATTAATAGGAATAGTTGAATTTCGCG-GAACAATTACAGTCATTACTTCTCTGGC 183166 || || | || | || | |||||| || ||| | ||||| || ||| ||| Sbjct 153668 GACTTTTTGGTGGGCACGGTCGTGTTTCGCTTGATCAAGGGC-GTCATGACACCTCCGGC 153726 Query 183167 AGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTATC 183226 || || | || | || || || || || || || || || || ||| || || Sbjct 153727 GGTCTCGATACCCATCGACAAGGGCGCAACGTCGAGCAACAACAAGTCTTGCGTCTTGGA 153786 Query 183227 TGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATC 183286 || || | | | || || ||||| || || || ||||| || || || |||||||| Sbjct 153787 CGAGGTATCACCGGTCAAGATCGCAGCCTGGACGGCGGCACCGTACGCGACGGCTTCATC 153846 Query 183287 TGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAAT 183346 ||||| || || || |||| || || ||||| || || | | | |||||| Sbjct 153847 CGGGTTGATGGATCGGTTCGGTTCTCGACCGTTGAAAAAGTCGGAGACGAGCTTTTGAAT 153906 Query 183347 TTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGAT--ATTACTTTTACTA 183404 || || || | ||| ||||||||||| | || | || | || | |||| | | Sbjct 153907 CTTGGGGATCCGAGTGGAACCACCGACGAGGACGATCTCGTTGACGGACGACTTGTC--A 153964 Query 183405 ATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATA 183464 || | ||||| || || ||||| || || ||||| || | || || || ||| | Sbjct 153965 ATCTTGGAATCCCGCAAGACCTTTTCGACCGGATCCATGGTCTGTCGGAACAAGTCTTGA 154024 Query 183465 CATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAG 183524 |||| |||||| |||| |||| || | || | ||||||| ||||| | | | Sbjct 154025 CATAGCTCTTCGAATCGAGCTCGGGTGATGGAAGTGTAAAAGTCGATACCCTCGAACAGA 154084 Query 183525 GAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACAT 183584 ||||| ||||| || | || || | | || || || |||| || |||||||| || Sbjct 154085 GAATCGATTTCGATTGTCGTCTGCGCGGCGGAAGACAAGGTTCGCTTCGCTCGTTCGCAA 154144 Query 183585 GCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTT 183644 || |||| ||||| || | | || | || | | ||||| | || | |||| Sbjct 154145 GCCGTTCGCAGTCGTCGGAGCGCTCGGGCGTTGTTCGAGATATCCTTCTTGTTCTTTCGC 154204 Query 183645 TTAAATTCAGTAATAAAATG-TTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATG 183703 || ||||| || ||||| |||| | | || | ||||| ||||||||||| ||||| Sbjct 154205 TTGAATTCCTGAACGAAATGGTTGACG-AGTCGGTTGTCAAAGTCTTCACCACCCAAATG 154263 Query 183704 TGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATAC 183763 || || || || || || || |||||||| || || ||||| || | || | || || Sbjct 154264 GGTGTCACCGGCGGTCGCCTTGACTTCAAAGATGCCCTCTTCGATGGTCAAGAGGGAGAC 154323 Query 183764 ATCAAATGTACCACC 183778 ||| || || ||||| Sbjct 154324 ATCGAACGTTCCACC 154338 >seq2 Length=1446810 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || |||| || || | || | || || || || || || || | Sbjct 440464 TTTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGT 440405 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| |||||||| || || |||||||| ||||| | |||||||| | Sbjct 440404 AGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGT 440345 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || |||||||| || || | ||| ||||| || || | || || | Sbjct 440344 CAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGG 440285 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| || || | |||||||||||| || || || || ||||||||||| Sbjct 440284 ATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 141 bits (156), Expect = 3e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | || || || || || ||||| ||||| |||||||| || || || Sbjct 440232 CATACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC 440173 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||||||||| | || ||||| ||||| Sbjct 440172 GGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGG 440113 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||| || || | |||| || | Sbjct 440112 AGGAATCCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATTGTATCACTTGACT 440054 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | || | |||||||||||| | || || || || |||||||| Sbjct 440053 CGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| | ||| | || || |||||||| || ||||| || ||||| Sbjct 440688 CATACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATC 440629 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| || || || | || ||||| || ||||| | |||||||| || || Sbjct 440628 CGACAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGG 440569 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || | || ||||| || || | || || | || Sbjct 440568 CGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTC 440509 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || | ||||||||||| | || || ||||| || ||||| Sbjct 440508 GACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || || ||||| || || || || || || || ||||| Sbjct 440004 CATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATC 439945 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| |||||||| || || |||||||| ||||| | |||||||||||||| Sbjct 439944 CGAGAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGG 439885 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||| || || ||||| || || | || ||||| || || | || || | ||| Sbjct 439884 AGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTC 439825 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||||||||| || || Sbjct 439824 GACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252963349422