Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq22 136 4e-27 seq15 87.8 2e-12 >seq22 Length=364263 Score = 136 bits (150), Expect = 4e-27 Identities = 269/393 (68%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||| || ||||||| |||||| || || || | | || |||| |||||||| Sbjct 67472 CGCTTGTTACCTCCCTGGTCGACGTATCGAGCAGTCGCATCGTAAGCTCGAAGCATGGGG 67413 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 ||||| || | | | ||||| || ||| || | || | || || ||||| Sbjct 67412 ACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACGATCCCTTGGCTCGGATGTT- 67354 Query 79642 GAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700 | | | || | ||| || || || | |||||||| || || |||||| || Sbjct 67353 GTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCATGGCACAAGTCTTGAGGGT 67294 Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760 |||||||| ||||| ||||||||||||||||| ||||||| |||||| |||| ||| Sbjct 67293 GTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCAAGAAGCACGAAGACAACTG 67234 Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820 |||| ||||||||||||||| | |||||||| ||||| || ||| | | | Sbjct 67233 AGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGTGGGTAAAGTATCGCTCGGA 67174 Query 79821 CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGAC 79880 ||| || | || ||||| | || || ||| ||||||||| ||||| ||||| Sbjct 67173 CATGAGGTTATATGTCTCAATAACCTTTTCGACGTCTCGGCCGTGGATACCGACGGCGAC 67114 Query 79881 GCGCATGAAGAGGTACTG-GGGCGTCTCGCCGA 79912 ||||||| | || ||| || ||| ||| ||| Sbjct 67113 TCGCATGATCATGTGCTGAGGTCGT-TCGGCGA 67082 Score = 125 bits (138), Expect = 8e-24 Identities = 307/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 20369 GGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATG 20428 || || ||||||||| | || ||||| ||||||||||| || || ||| | || || || Sbjct 68527 GGCCTACGCAACTCGCTCCTGGTCGCTCCCATGCCGACTGCATCCACCTCACAAATTCTG 68586 Query 20429 GGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCC 20488 || ||||| |||||| |||||||| | |||||| |||| || ||| || ||| Sbjct 68587 GGCTGGAACGAATGTTTCGAACCGTACACCAGCAACATTTACTCCCGACGTGTGCTCGCC 68646 Query 20489 GGTGAGTTCGTCATGGTAAACAAGCACCTGGTC----CGCGACTTGCAGAAGATCGATAT 20544 ||||| ||| || ||| | || |||||| || |||||| || | | | | Sbjct 68647 GGTGATTTC--CA-GGTCGTCT-GCCCCTGGTTGTTGCGTGACTTGGTCAACCTGGGTCT 68702 Query 20545 GTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG-CATTGG 20603 ||| | | || ||||| ||| || | ||| || | |||| |||| Sbjct 68703 CTGGGACGACGAGATGAAGAACCGAATCATCGCACACGGTGGCTCCATCCAAAACATTCC 68762 Query 20604 ATA---TCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGA 20660 | ||| |||| | |||| || |||| ||| || ||||||||| |||||| Sbjct 68763 CAACATTCCTGCAGAGT-TGAAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGG 68821 Query 20661 GCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATG 20720 | |||||||| | || ||||| || || |||| ||||| || || || || |||||| Sbjct 68822 GTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATA 68881 Query 20721 TCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACA 20780 || |||| || || ||| |||| | || ||||| | ||||| ||| | | Sbjct 68882 TCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGA 68941 Query 20781 AGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGA 20818 | || |||||||| ||||||||||| |||| |||||| Sbjct 68942 AAGGACTCAAGACCGGCATGTACTACTTGCGAACCCGA 68979 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||||||||| ||||| ||||| ||| ||| || || Sbjct 67093 CCTCAGCACATGATCATGCGAGTCGCCGTCGGTATCCACGGCCGAGACGTCGAAAAGGTT 67152 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||||| |||| ||| | || | ||| || ||||| |||||||| | ||| Sbjct 67153 ATTGAGACATATAACCTCATGTCCGAGCGATACTTTACCCACGCCTCGCCGACCTTGTTC 67212 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||||||| |||| ||| |||| || ||| | || || |||||||| ||| Sbjct 67213 AACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCGCAATGAAGGACGAC 67272 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAG 19312 |||||||| |||||||| || |||||| Sbjct 67273 TCGATTGAGGGAATCTACGACACCCTCAAG 67302 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || |||||||| ||||||||||| |||||||| || |||||||| ||||| | |||||| Sbjct 68978 CGGGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGAAGTGCATC 68919 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 || |||| ||| ||||| |||| ||| ||||| || || || || ||| Sbjct 68918 GACGTGAGCTGACCCATCGAAGGGTTGGTCATGTGGATATTGAGGGATTGCGATTGATCG 68859 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 || | || || |||||||| || | ||||||| ||| || || ||||| | Sbjct 68858 ATAAAGGCTCCTCGGTCGGCAGCGAGATCGATGATACCCTTCTGGCTGATTTCCCAAACA 68799 Query 78367 GTCCGGTAAATGGCCTTCAGCTCT 78390 ||| ||| || ||||||| |||| Sbjct 68798 GTCTTGTAGATAGCCTTCAACTCT 68775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 19490 TCGTTCGC--CATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 || ||||| |||||||||||| || ||||||||||| ||| | || ||| |||| || | Sbjct 67532 TCTTTCGCAGCATCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTC 67591 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTC 19607 | |||||| || | || || | || || ||||| ||| || | ||||| | Sbjct 67592 GAAAGAACCACGGCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTACGCGCTCTGGATCC 67651 Query 19608 CGGACCTATTCATGGAGAAG-GTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCAC 19666 | ||| | ||||| | || | || ||| ||||| || ||| |||||||||| || Sbjct 67652 CCGACATGTTCAT-GCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAAC 67710 Query 19667 GAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 || || || || || |||| ||| ||||| |||| ||| | || || ||| Sbjct 67711 GAGTGTCCGGGTCTGTCCGAAGTCCACGGCAAGGCTTTCGACGAATTATAC 67761 >seq15 Length=506865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| ||||| || |||||||| || |||| ||||||||||| || || Sbjct 482779 ATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGACTGACGTTCTCCAACGAACTCATC 482838 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||||| |||||||| ||||| || |||||| Sbjct 482839 TCCCGAGACGAGGGTCTCCACACCGACTTTGCA 482871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524292614560