Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22 145 8e-30 seq29 120 3e-22 >seq22 Length=364263 Score = 145 bits (160), Expect = 8e-30 Identities = 265/384 (69%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACG---GTGACGACTACACGCGT 53236 |||||| | | ||||||| |||||| | |||||||||| | |||| | | | | Sbjct 67093 CCTCAGCACATGATCATGCGAGTCGCCGTCGGTATCCACGGCCGAGACGTCGAAAAG--- 67149 Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 || |||||| || || | ||| | | |||||||| |||||| |||| ||| || Sbjct 67150 GTTATTGAGACATATAACCTCATGTCCGAGCGATACTTTACCCACGCCTCGCCGACCTTG 67209 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 |||||||| |||||| |||||||||| |||| |||||| |||| || |||||||| Sbjct 67210 TTCAACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCGCAATGAAGGAC 67269 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 |||||||| || || |||||||| || |||||| |||||| |||||||| || Sbjct 67270 GACTCGATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAAACTGCG 67329 Query 53417 GGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 || ||||| || | || | | | ||| |||| || || || | || || || Sbjct 67330 GGCGGTATTGGATTGAACATTCAC-AACATCCGAGCCAAGGGATCGTACATTGCCGGAAC 67388 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||||| | | |||| ||||| || ||||| || | | | | || || || || Sbjct 67389 CAACGGGTACTCGAATGGTATCGTCCCCATGCTTCGAGCTTACGATGCGACTGCTCGATA 67448 Query 53536 CGTCAACCAGGGTGGTGGGAAGCG 53559 |||| ||||||| ||| ||||| Sbjct 67449 CGTCGACCAGGGAGGTAACAAGCG 67472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| || ||| ||| || ||||| || |||||| || | || || | ||| Sbjct 68782 AAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGGGTATCATCGATCTCGCTGCC 68841 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || || || | ||||| || || || || || || ||| |||| || ||||| Sbjct 68842 GACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATATCCACATGACCAACCCTTCG 68901 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| || | | ||||||||||| ||||| |||||||| ||||||||||| || ||| Sbjct 68902 ATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGAAAGGACTCAAGACCGGCATG 68961 Query 55910 TACTATCTGCGGACCCG 55926 ||||| |||| ||||| Sbjct 68962 TACTACTTGCGAACCCG 68978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 53567 TCGTTCGC--CATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || ||||| |||||||||||| || |||||||| || | | || || |||| || | Sbjct 67532 TCTTTCGCAGCATCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTC 67591 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 | ||| || || | ||||| | || ||| |||||||| ||| || || ||||| Sbjct 67592 GAAAGAACCACGGCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTAC-GCGCTCTGGATC 67650 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||| | ||||||| | || ||| ||||| || ||| |||||||||| ||| Sbjct 67651 CCCGACATGTTCATGCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAAC 67710 Query 53744 GAGTGCCCCGGCCT 53757 ||||| || || || Sbjct 67711 GAGTGTCCGGGTCT 67724 >seq29 Length=150947 Score = 120 bits (132), Expect = 3e-22 Identities = 293/433 (68%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || |||||||| || || ||||||| ||||| | | || ||||| || | ||| | Sbjct 11140 CCGGTTCCGATGCCGTCCGCACCATCGATCAGCACAAGAGGAACGACCGGCAGGTAATAT 11081 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTC--CGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 || || || | | || | |||| || | || ||||||||| | | || || | | Sbjct 11080 TCCGGTTCGATCCCCATATCGTCTTCGACCTG--GTACTTGAGGATGGGATCATCGTTGG 11023 Query 117270 GATCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 ||| ||| | || || | ||| ||| | |||||||||||||||| || || Sbjct 11022 GATGGAAAA-GTGCTCGAGTCATTCGTGGGATATTGGTGAAAATGTAACGAGCACTGGCC 10964 Query 117329 GCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 ||||| || || ||||| | ||||||||||||||| ||| | ||| | ||||| | | Sbjct 10963 GCATCTTTACCTCCAGCGATACGCGTACCGAATTGACCATTGGGCGAGAGAAGGTTGATG 10904 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAG-GCTCGCC 117445 || ||| ||| |||||||| || || | |||||| || | || || | | | Sbjct 10903 TTATTGCTGCCGACAAAGTTCTGGGCGAGACCGACAATTGT--CATGACCAGCGATTG-T 10847 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || ||||||| || | |||||| ||||| || || || ||||| || Sbjct 10846 TCGCCGTGATGGTAAGCCGTCTTTTCAGACACGTAACCCGCAAGTTGGGCGACCTTGATT 10787 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||||| || || |||| || || | | ||||| || |||| ||||||| Sbjct 10786 TCCTTGACG--AGCTTTCGTTTGAAACAACCAAACAAGACCTTTCGTTGACCAGGCTTCA 10729 Query 117564 GACCATCCGCCAC 117576 |||||||| || Sbjct 10728 ACCCATCCGCGAC 10716 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||||||||||| || || || || | ||||| || || || Sbjct 10987 GTGAAAATGTAACGAGCACTGGCCGCATCTTTACCTCCAGCGATACGCGTACCGAATTGA 10928 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| ||| ||||||| ||| ||| ||| || || ||||| || | | ||| Sbjct 10927 CCATTGGGCGAGAGAAGGTTGATGTTATTGCTGCCGACAAAGTTCTGGGCGAGACCGACA 10868 Query 152149 A---TCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || || || | ||| ||||| || || ||||||| || | | ||| Sbjct 10867 ATTGTCATGACCAGC-GATT--GTTCGCCGTGATGGTAAGCCGTCTTTTCAGACACGTAA 10811 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCC 152232 ||||| | || || ||||| || ||| Sbjct 10810 CCCGCAAGTTGGGCGACCTTGATTTCC 10784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215493825200