Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq22 109 6e-19 seq21 102 9e-17 seq29 100 3e-16 seq4 86.0 7e-12 >seq2 Length=1446810 Score = 156 bits (172), Expect = 5e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| |||||||| ||||| || ||||| ||||| || || || | || | ||| Sbjct 439790 AGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCGACAATG 439849 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||| | || || ||||||||||||||||||||||| || ||||| || | || || | Sbjct 439850 TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCG 439909 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 |||| ||||| ||||| |||| ||| ||||| | || || || |||| |||||||||| Sbjct 439910 CTGGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGGAATCCA 439969 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || |||||||| || || ||||| Sbjct 439970 CGCTTCACCTCGTCTTGCGGCTGCGGGGTGG 440000 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || | || || |||||| || Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| || || |||||||||||||| |||||||| |||||| Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| || || || | || || || | ||||| || Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | |||||||| || ||||| || || ||| Sbjct 440182 ATTCAAAAGGAGTCGACTCTGCACCTGGTC 440211 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| |||||||| ||||| || || || || ||||| || Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| | || || ||||| |||||||| || || || |||||| Sbjct 440290 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 440349 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| ||||| |||| || ||||| | ||||| || Sbjct 440350 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 440409 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| | || | ||| |||| | || ||||| Sbjct 440410 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 440456 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| |||||| | ||||| ||||| || || ||||| || ||||| Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || |||||||||||||| || || || || |||||| Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || ||||| | ||||| | ||| ||| | | || || || Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || | || ||||| | || ||||| Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 >seq22 Length=364263 Score = 109 bits (120), Expect = 6e-19 Identities = 226/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 || ||||||||| |||| | || |||||| || ||||| | | ||||||| | Sbjct 67877 GCATCCTTGTAGAGCATGAATGGTCCACCGGTTTCAGTCTGTGCATCCATGATGGCGAAC 67818 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 |||| || ||||||||| ||| | ||| |||||||| | ||||| |||| Sbjct 67817 CAAAGCTTTTGCGCCTTGATGACCCTCTTGAACTTGCCTTCACGTTCGTACTTTTCGTAT 67758 Query 81142 GCTTCGTCGAA---CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCAC 81198 ||||||||| |||| ||||| | ||| | || | || |||||||| |||||| Sbjct 67757 AATTCGTCGAAAGCCTTG---CCGTGGACTTCGGACAGACCCGGACACTCGTTGGGGCAC 67701 Query 81199 ATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGG 81258 |||| ||||||| ||| ||| ||| |||||| ||| ||||||||||| Sbjct 67700 ATCAACGCCCAGTCGCCGTCCGCCTCGACACGTCGCATGAACATGTCGGGGATCCAGAGC 67641 Query 81259 GCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 ||| ||||||||| ||| || | || || | || ||||| || | |||| Sbjct 67640 GCGTAGAACAGGTCTCGGGCTCGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATG 67581 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 ||||| | || ||||| ||||| || || || || Sbjct 67580 AAGTCGAAGACATCCGCGTGCCAGGGTTCGAGGTA 67546 >seq21 Length=401567 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 241997 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 241938 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || ||||||||||| || || || || ||||||||||| | || || || || Sbjct 241937 TCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGC 241878 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| ||||| |||| || ||||| | ||||| || | || ||||| ||||| | Sbjct 241877 AAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCTTG 241818 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||| | || || ||||| Sbjct 241817 CACTTGGTCTTGAGGCTCCGAGGTGG 241792 >seq29 Length=150947 Score = 100 bits (110), Expect = 3e-16 Identities = 238/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || ||||| || || || |||| |||||| | || | ||||| || || |||||| Sbjct 10785 GAAATCAAGGTCGCCCAACTTGCGGGTTACGTGTCTGAAAAGACGGCTTACCATCACGGC 10844 Query 32107 GAGGCGTCGCTC--CAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 || ||||| || | || |||||| || || |||||||||||||| |||| Sbjct 10845 GAACAATCGCTGGTCATGACA--ATTGTCGGTCTCGCCCAGAACTTTGTCGGCAGCAATA 10902 Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224 || | ||| | ||| ||| ||| || || || || || |||| || || || |||| Sbjct 10903 ACATCAACCTTCTCTCGCCCAATGGTCAATTCGGTACGCGTATCGCTGGAGGTAAAGATG 10962 Query 32225 CTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACC 32284 | || || | |||||||| |||||| | || ||| ||| || ||||| | | Sbjct 10963 CGGCCAGTGCTCGTTACATTTTCACCAATATCCCACGAATGACTCGAGCACTTTTCCATC 11022 Query 32285 CGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGT 32344 | || ||| | | ||||||||| | | || |||| | | || |||| |||| | Sbjct 11023 CCAACGATGATCCCATCCTCAAGTACCAGGTCGAAGACGATATGGGGATCGAACCGGAAT 11082 Query 32345 TCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| ||||| |||| | | || | | ||||| || ||||||||||| || Sbjct 11083 ATTACCTGCCGGTCGTTCCTCTTGTGCTGATCGATGGTGCGGACGGCATCGGAACCGG 11140 >seq4 Length=1260884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| || || || || ||||||||||| | || || || || ||||| Sbjct 784574 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 784633 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| |||| || ||| | | ||||| || |||| ||||| || ||| | || | Sbjct 784634 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 784693 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 |||||||| | || ||||| Sbjct 784694 GTCTTGCGATTGCGAGGTGG 784713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309872462880