Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq4 109 5e-19 seq21 102 7e-17 >seq2 Length=1446810 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||||| ||| | || || |||||||| || | || Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| |||||||| || ||||| || Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || || ||||| ||| || ||| | || ||||||||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||||||||| ||||| ||||| || Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGGTAT 440687 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || || || ||||| ||| | || Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || || || || || || || || Sbjct 440290 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 440349 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || || | ||||| | ||| ||||||| |||||| Sbjct 440350 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 440409 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||||| || ||||| |||| ||||||||||| || Sbjct 440410 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGGTAT 440459 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 ||| ||||||||||| | || ||| | ||||| ||| |||| ||| ||||||| | ||| Sbjct 440762 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 440821 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || || |||||||| |||||||| || ||||| || || || || || | ||| Sbjct 440822 AAGTCGAAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 440881 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 || || || |||||||| | |||| | || ||||||| Sbjct 440882 GGAAAGCAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 440921 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 ||||| ||||| ||| | || ||||| || || ||| | || ||| | || || | ||| Sbjct 439792 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCGACAATGTC 439851 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || || || ||||| || || || || || ||||| || || || || | ||| Sbjct 439852 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 439911 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || || || | ||||| || ||| | || ||||||||||| || ||||| || || Sbjct 439912 GGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGGAATCCACG 439971 Query 27186 TTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || ||||| |||||||||| || Sbjct 439972 CTTCACCTCGTCTTGCGGCTGCGGGGTGGTAT 440003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || | ||||| || | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || || ||||| || || || || || || || Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || |||||||| | || | ||||| |||||| Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||||||||||||||| Sbjct 440182 ATTCAAAAGGAGTCGAC 440198 >seq4 Length=1260884 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||||||||| ||||| || || || || || ||||| || || | ||||||||| || Sbjct 784574 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 784633 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | ||| | ||||| |||||||| || ||||||||||| || || ||| Sbjct 784634 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 784693 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||||| || Sbjct 784694 GTCTTGCGATTGCGAGGTGGTAT 784716 >seq21 Length=401567 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || || || || || || | || ||| | || || | ||||| Sbjct 241997 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 241938 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| |||||||| || || || || ||||| || || | ||||||| Sbjct 241937 TCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGC 241878 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | ||||| | ||| |||| || ||||||||||| |||||||| ||||| Sbjct 241877 AAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCTTG 241818 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||| | | || ||||| Sbjct 241817 CACTTGGTCTTGAGGCTCCGAGGTGG 241792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917997700480