Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 seq4 84.2 2e-11 >seq2 Length=1446810 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | || || || || || |||| ||||| | | Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| || || ||||| ||||| | ||| || | Sbjct 440518 GACACTATCGACAAT--GTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACC 440575 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||||| || || |||||||| || ||||| |||| || | |||||| ||||||| Sbjct 440576 AGCAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACA 440635 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || |||| ||||||||||| ||||| || || Sbjct 440636 ACATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 >seq4 Length=1260884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || ||||| || || || || ||||| || || | || Sbjct 784580 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 784639 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||||||| ||||||||||| || ||| |||||||| ||||| ||| Sbjct 784640 GATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 784699 Query 28003 CGTTTGCGTGGCGG 28016 || ||||| || || Sbjct 784700 CGATTGCGAGGTGG 784713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862079056598