Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-42 seq21 167 5e-36 seq4 95.1 3e-14 >seq2 Length=1446810 Score = 188 bits (208), Expect = 2e-42 Identities = 158/194 (81%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| |||||||| ||||| || || |||||||| ||||||| ||||| | |||||||| Sbjct 439983 GACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGACCATCTTC 439924 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||| || |||||||| | ||||| || |||||||||| ||| ||||||||||| Sbjct 439923 GAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTG 439864 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || ||||| ||||| ||| ||| |||||||||||||| ||||| Sbjct 439863 GATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACCTCGAGAGTGATGGTCTT 439804 Query 211085 TCCCGTGAGAGTCT 211098 ||| || ||||||| Sbjct 439803 TCCGGTAAGAGTCT 439790 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||||| || || |||||||| || || | |||||| | ||||||| Sbjct 440441 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 440382 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| |||||||| || | || ||||| ||| Sbjct 440381 TCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCC 440322 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || ||||||||||| ||| |||||| ||||| ||||| ||| Sbjct 440321 TGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTC 440262 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || | |||||| Sbjct 440261 TTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || ||||| ||||| ||||| ||||| ||||| ||||| || || | || || Sbjct 440222 CGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTT 440163 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||||||||||||| || ||||| | || || ||||||||||||| || Sbjct 440162 CGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCC 440103 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 ||||||||||||||||| || || || ||||| || ||| ||| || || || Sbjct 440102 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCA---CTTGACTCGACTTCC 440046 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| |||||||| || | ||||| || || | |||||| Sbjct 440045 AAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || || ||||| ||||||| | ||| | || || |||| ||| Sbjct 440661 GTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTG 440602 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | ||||| ||||| || || | |||||||||||||| ||||| Sbjct 440601 CTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAATCTT 440542 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| ||||| ||| || || || || |||||||||||||| || Sbjct 440541 GGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGT 440482 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 440481 CAACGTCTTCACAAAGATTTGCAT 440458 Score = 113 bits (124), Expect = 1e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 ||||| | | |||||| |||||||||| |||||| || || ||||| | ||||| ||| Sbjct 440919 TAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGG 440860 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || |||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct 440859 TCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCCGAC 440800 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 ||| || || | |||||| ||||| || || | ||||| Sbjct 440799 GATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 440760 >seq21 Length=401567 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || | ||| | ||| | |||||||| || || ||||| || |||| |||||| Sbjct 241798 CGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTT 241857 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||||||||| |||||||| | || || |||||||| || | ||| Sbjct 241858 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCT 241917 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| ||| || |||||||| Sbjct 241918 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGG 241977 Query 211074 GTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| |||||||| Sbjct 241978 GTGATGGTCTTACCCGTGAG 241997 >seq4 Length=1260884 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||| ||||| || |||||||| || || | | ||| | |||||||| Sbjct 784696 GACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCATCTTC 784637 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| |||||||| | || || |||||||| || | ||||||||||| || Sbjct 784636 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTG 784577 Query 211025 GATCT 211029 |||| Sbjct 784576 AATCT 784572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150900979010