Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 >seq2 Length=1446810 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || ||||| ||||||||||| ||| || Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || || || || ||| | ||||| || || Sbjct 440290 GACACCATCGACAATGTGAAATC-CAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCA 440348 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || || || ||||| | ||| || | ||| ||||| Sbjct 440349 GCAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAA 440408 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || ||||| || || || || | | ||||| || || Sbjct 440409 CATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 440456 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| |||||||| || ||||| || ||| || Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | || ||||| ||||| | ||||| || || Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAAGGCATCCCGCCCGACCA 440576 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || ||||| || || |||| |||| || || || |||||||| Sbjct 440577 GCAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAA 440636 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || || ||||| | |||||||| || Sbjct 440637 CATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009295157592