Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-32 seq21 125 2e-23 seq4 111 4e-19 >seq2 Length=1446810 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || |||||| | ||| | |||||||| || |||| ||||| |||| | |||| || Sbjct 440445 TCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCC 440386 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| ||||||||||| | |||||| ||||| ||||| ||||| ||||| Sbjct 440385 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 440326 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || |||||||| |||||| ||||||||||| |||| ||| || || | ||||| Sbjct 440325 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 440266 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||| || | ||| | ||||| Sbjct 440265 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| ||||| || |||||||| || |||| |||||||| | | ||| Sbjct 439994 CGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGGGTT 439935 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||||||||| | |||||| || || || ||||| || Sbjct 439934 CGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCC 439875 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||| ||||| |||| ||| || || | Sbjct 439874 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGACCTCGAGA 439815 Query 225673 GTGATCGTCTTGCCCGTCAAAGT 225695 ||||| ||||| || || | ||| Sbjct 439814 GTGATGGTCTTTCCGGTAAGAGT 439792 Score = 140 bits (154), Expect = 8e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 ||||||| | ||| || || |||||||| | |||||| || || ||||| | |||||| | Sbjct 440921 TGTAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 440862 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655 ||||||||||||| |||||||||||||||||||| ||| || || || ||||| | Sbjct 440861 GGTCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCCG 440802 Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 | | ||| || || || ||||| |||||||| |||||||| Sbjct 440801 ACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 440762 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || || || || | |||||||| | ||| |||| || || || | ||| Sbjct 440661 GTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTG 440602 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | ||||| ||||||||||| || ||||||||||| || ||||| Sbjct 440601 CTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAATCTT 440542 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| ||||| |||| || || || | ||||||||||| || || Sbjct 440541 GGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGT 440482 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | || | |||||| Sbjct 440481 CAACGTCTTCACAAAGATTTGCAT 440458 >seq21 Length=401567 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || |||| ||| | ||| | ||||| || || || | ||||| || | | ||| Sbjct 241798 CGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTT 241857 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| | ||| || ||||| ||||| || ||| Sbjct 241858 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCT 241917 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| |||| || || || | Sbjct 241918 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGG 241977 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 241978 GTGATGGTCTTACCCGT 241994 >seq4 Length=1260884 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || || ||| | ||| | ||| || || || |||| ||||| |||| ||| |||| || Sbjct 784702 TCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCC 784643 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || |||||||| | ||| || ||||| || || ||||||||||| Sbjct 784642 ATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTT 784583 Query 225618 GTCTTGGATCT 225628 |||||| |||| Sbjct 784582 GTCTTGAATCT 784572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530069331356