Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq18 107 1e-18 >seq18 Length=491663 Score = 107 bits (118), Expect = 1e-18 Identities = 241/356 (68%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||| || ||||| |||| || ||||| ||||| || ||||||||| |||| || Sbjct 181932 CTTTCGGATTCCATGCGCTCATAATGATCCGCCTATCCGTCGGGTTGTTCTTGATCTTGT 181873 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC-CTCATGTCCGTG 27498 | | | | ||||||||| || ||| |||| || || || | || ||| || Sbjct 181872 CAATCACTTGCGCCAGCTGATCGACGCCCTGTCCCGTATAATCATCCTCGCACGTCT-TG 181814 Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || |||||||||||||| || || || || |||||||||| ||| ||||| Sbjct 181813 TACTCGGCGCCGAAATGCCTCCACTGAAATCCATAGACCGGTCCCAAGTCACCCTCCCTT 181754 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | ||| | | || |||||| | | || || || ||||| || ||||||| | Sbjct 181753 CGGTGTCCCAGTCCGACCTTGTCGAGGTACTCCCTTGATCCGTTTCCGGCCCAGATATGA 181694 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 | |||| || | ||| || || || || || | ||||||||| || ||||| Sbjct 181693 ATATCCTTTTCCGCGAGAAGCTTTCCGTCGGTCGAGCCGCGGACGAACCAGAGTAGCTCT 181634 Query 27679 TCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCC 27732 || |||||| | | || ||||| | || || || ||||| || ||| ||||| Sbjct 181633 TCGACGACG--CCGCGAAGGAAGACTCGTTTCGTAGTTAGGAGCGGTAAC-GTCCC 181581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506866750694