Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 109 1e-18 seq4 89.7 1e-12 seq21 84.2 5e-11 >seq2 Length=1446810 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || ||||||||||| | || |||| || || || | Sbjct 440664 CAAG-TGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCA 440606 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||||||||| | || |||||||| | || ||| |||||||| || || Sbjct 440605 ACTGCTTT--CCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTG 440548 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | |||| || ||| |||||||| || || || || Sbjct 440547 AATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTT 440488 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||||| |||| ||||| Sbjct 440487 TCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || || ||||||||||| |||| | |||| |||||||| || ||||| | Sbjct 440426 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTT--C 440369 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | |||||||| | | |||||||| | || ||| || ||||| || || || || || Sbjct 440368 CAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATT 440309 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | ||| | || | | |||| || || ||||| || || || || || || || |||| Sbjct 440308 TCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAG 440249 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||| ||||| | |||||| Sbjct 440248 TCTTGACGAAAATCTGCAT 440230 >seq4 Length=1260884 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| |||| || |||| |||||||| | Sbjct 784693 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCATCTTCGA 784635 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | ||||||||| | | ||| |||||||| ||||||| Sbjct 784634 GCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTGAA 784575 Query 152017 T 152017 | Sbjct 784574 T 784574 >seq21 Length=401567 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || || |||||||| || | | |||| |||||||| || || ||| Sbjct 241822 GTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTTCGGCCATCTTCGAGCTGCTTGCCG 241881 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | | ||||||||| | || ||| |||||||| || || || || ||| Sbjct 241882 GCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 241941 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAG 152083 || | || | | |||| || ||| || || || || || || || |||||||| Sbjct 241942 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819706033654