Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 187 5e-42 seq21 147 5e-30 seq4 96.9 7e-15 seq15 87.8 4e-12 >seq2 Length=1446810 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| || || |||| || || ||| ||| || |||||||||||||| | Sbjct 440457 ACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGA 440398 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || || || || || || |||||||| ||||| |||||| ||| Sbjct 440397 AAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGG 440338 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || |||||||| | ||| || | ||||| |||||||| | ||| || Sbjct 440337 GATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAAC 440278 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 440277 TTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || | || || || | |||| ||| || ||||||||||| || | Sbjct 440001 ACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGA 439942 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || || || |||||||| ||||| || ||| || Sbjct 439941 GAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGG 439882 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | |||||||||||||| | |||||| Sbjct 439881 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGAC 439822 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 ||||||||||| ||||| || || | ||||| Sbjct 439821 CTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 439790 Score = 140 bits (154), Expect = 7e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| | || ||||| || | || || ||||| ||||||||||| | Sbjct 440229 ACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGA 440170 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || || || || ||||||||||| || || |||||| || Sbjct 440169 GAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 440110 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| |||||| ||||| || || | ||||| || || | |||| Sbjct 440109 AATCCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTCGATTGTATCACTTGACTCGA 440051 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 440050 CTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 138 bits (152), Expect = 2e-27 Identities = 130/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| |||| |||| || | |||||| || | || || |||||||||||||| ||||| Sbjct 440921 TGTAATCAGACAAG-GTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGC 440863 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| |||||| || ||||||||||||||||| | || ||| | || || |||||| Sbjct 440862 TGGTCGGGCGGAATGCCTTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCC 440803 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || | ||||||||| | |||||| ||||| || |||||||||| Sbjct 440802 GACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 440760 Score = 136 bits (150), Expect = 8e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || || || |||||||| || | |||| || || || ||||| | || || ||||| || Sbjct 440648 TCCTTCTGAATGTTGTAATCCGACAAG-GTTCGACCGTCCTCCAACTGCTTTCCGGCGAA 440590 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| ||||| ||||| ||| || || |||||||| || ||||| | || || | Sbjct 440589 GATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 440530 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||||||||||| | |||||||| || ||||||||||| || ||||| ||||| || Sbjct 440529 GTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCAC 440470 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 440469 AAAGATTTGCAT 440458 >seq21 Length=401567 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || | | |||| || || ||| || || || ||||||||||| | Sbjct 241791 ACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGA 241850 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || || || || ||||| |||||||| || || |||||| ||| Sbjct 241851 AAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGG 241910 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 241911 GATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 241970 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||||||||| Sbjct 241971 CTCGAGGGTGATGGTCTTACCCGT 241994 >seq4 Length=1260884 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| |||| || | |||| || || || || || |||||||||||||| | Sbjct 784714 ACCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 784655 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || |||||||| || || || || ||||| |||||||| || || |||||| | Sbjct 784654 CAAG-GTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGG 784596 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTG 283017 | ||||| ||||||||||| |||| || Sbjct 784595 GGATACCTTCCTTGTCTTGAATCTGTG 784569 >seq15 Length=506865 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||||||||| | | |||||| | || || || ||||| || |||||| | || Sbjct 482989 ATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTC 483048 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || || || |||| || ||||| ||| | ||||| |||| |||||||| | Sbjct 483049 GTCGCCCTTGGAAACGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAAC 483108 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGA--AAAGCGTGTCAGC 230390 ||||| |||||||| ||| | ||||| ||||| | ||||||| || Sbjct 483109 ATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGC 483155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738207560396