Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 seq4 84.2 2e-11 >seq2 Length=1446810 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| || | |||||||| || || ||||||||| |||||||| || Sbjct 440232 CATACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC 440173 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| ||||||||||| || ||||||||||| |||||||| || | Sbjct 440172 GGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGG 440113 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || || || || Sbjct 440112 AGGAATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT--CGATTGTATCACTTGAC 440055 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| || | |||||| |||||||| ||||| Sbjct 440054 TCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 125 bits (138), Expect = 5e-24 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || || ||| |||| ||| || || |||||| || ||||||||||| Sbjct 440688 CATACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATC 440629 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || |||| |||| |||||| ||||| |||||||| || ||||| || | Sbjct 440628 CGACAAGGTT-CGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGG 440570 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | |||||||| ||| ||||| ||| || ||| | || ||||| | ||| Sbjct 440569 GCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT--CGATAGTGTCCGAGGA 440512 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || ||||||||||| || | |||||||| ||||||||||| Sbjct 440511 CTCGACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | ||| || |||||||||||| ||||| |||||||||||||| Sbjct 440004 CATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATC 439945 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || |||||||| || || |||||||| || |||||||| | Sbjct 439944 CGAGAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGG 439885 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || ||||| | |||| Sbjct 439884 AGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATAGTGTCCGAGGAT 439827 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCT 44321 || ||||| | || || |||||||| || || |||| Sbjct 439826 TCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 439790 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || || || |||| ||| | ||| ||||| ||||||||||| Sbjct 440463 TTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTA 440404 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || || | || || |||||||| || || |||||||| || ||||| || Sbjct 440403 GTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTC 440344 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| ||||| ||| ||||| |||| | | |||||||| | ||| Sbjct 440343 AGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGA 440284 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || |||||||| || || ||||| ||||| || ||||| Sbjct 440283 TTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 >seq4 Length=1260884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| || || ||| |||| ||| | || |||||| ||||||||||| ||| Sbjct 784716 ATACCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 784657 Query 44168 G-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || | || || |||||||| ||||| |||||||| |||||||| || | Sbjct 784656 GACAAGGT-TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 784598 Query 44227 AGGCACACCTTCCTTTTC 44244 || | ||||||||| || Sbjct 784597 GGGGATACCTTCCTTGTC 784580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990075333658