Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq21 156 1e-32 seq4 100 7e-16 >seq2 Length=1446810 Score = 178 bits (196), Expect = 3e-39 Identities = 163/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||||||||| || ||| ||| ||| Sbjct 440233 CAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCGGAC 440292 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||| ||||| || || || ||||| || ||||||||| Sbjct 440293 ACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAGCAA 440352 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| ||||| ||||||||||||||| | || ||| |||| || ||| || Sbjct 440353 CGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATC 440412 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || |||| |||| Sbjct 440413 CAGAAGGAATCCACCTTGCA-CTTG 440436 Score = 158 bits (174), Expect = 3e-33 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||||| || ||||| || ||||| |||||||| ||| ||| ||||| ||||| || ||| Sbjct 439792 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCGACAATGTC 439851 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || ||||| ||||| || ||||||||| | |||||||| Sbjct 439852 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 439911 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 ||||| |||||||||||||| | || || | ||||| ||| |||| || ||||| || Sbjct 439912 GGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGGAATCCACG 439971 Query 178119 CTGCATCTTGTTTTG 178133 || || || || ||| Sbjct 439972 CTTCACCTCGTCTTG 439986 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || ||||| ||||||||||| || || || ||| ||| Sbjct 440461 CAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCGGAC 440520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| ||||| ||||| || ||||||||| Sbjct 440521 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAGCAA 440580 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| ||| | || || || | || |||| | ||||| ||| | Sbjct 440581 CGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAAC-CTTGTCGGATTACAACAT 440639 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||||| | |||||| || Sbjct 440640 TCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGA 440673 Score = 104 bits (114), Expect = 6e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||| | || || || || ||||| | || || ||| || ||||| || || |||||| Sbjct 440762 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 440821 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| || ||||| ||||| || || || |||||||||||| | ||||| ||| Sbjct 440822 AAGTCGAAGATCCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 440881 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTA 178096 ||||| ||| | |||||||| ||||| |||| | ||||| Sbjct 440882 GGAAAGCAGTTGGAAGATGGCAGGAC-CTTGTCTGATTA 440919 >seq21 Length=401567 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| || ||| ||||||||||| |||||||| Sbjct 241997 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 241938 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| ||||| ||||| || |||||||| ||| | ||||||||||| Sbjct 241937 TCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGC 241878 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||||||||| | || ||| | || || ||| | || || || || || || Sbjct 241877 AAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCTTG 241818 Query 178122 CATCTTGTTTTGAGACTCAGA 178142 || | || ||||| ||| || Sbjct 241817 CACTTGGTCTTGAGGCTCCGA 241797 >seq4 Length=1260884 Score = 100 bits (110), Expect = 7e-16 Identities = 99/124 (80%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||| ||||| ||||| ||||| || |||||||| ||| | ||||||||||| || | Sbjct 784572 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 784631 Query 178066 AGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||||| | || |||| |||| || ||| |||| || || || || |||| Sbjct 784632 AGCTCGAAGATGGCCGAAC-CTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCA- 784689 Query 178125 CTTG 178128 |||| Sbjct 784690 CTTG 784693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730058712356