Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq21 107 2e-18 seq4 89.7 5e-13 >seq2 Length=1446810 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || |||||| |||||||| ||||||||||| || || |||| || Sbjct 440210 ACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCC 440151 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || |||| ||||| ||||| | |||| | |||||||||| | Sbjct 440150 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGG 440091 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||| || | || | || || || ||||| || |||| || || || | Sbjct 440090 ATCTTGCTCTTGACATTGTCG--ATTGTATCACTTGACTCGACTTCCAAGGTGATTGTCT 440033 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| ||||| ||||| |||||||| Sbjct 440032 TTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| ||||| || ||||||||||||||| || || || | ||| || || Sbjct 440672 CGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCG 440613 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || | |||||| |||||||| |||| || || ||||| | || | || |||||| Sbjct 440612 TCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTG 440553 Query 41768 TCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||| ||| | || | ||| || | || | |||||| ||||| || || | || Sbjct 440552 TCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCCGAGGACTCGACTTCAAGGGTG 440496 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || |||| |||||| || || || ||||| Sbjct 440495 ATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || || || || |||||| |||||||| ||||| || || ||| Sbjct 440000 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 439941 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| |||| || || || || | ||| Sbjct 439940 AGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 439881 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | |||||| || || | Sbjct 439880 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATAGTGTCCGAGGATTCGA 439823 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || |||| | ||| Sbjct 439822 CCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTGTTCGA 439784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||| ||| |||||||| ||||| |||||||| ||||| || | || ||| Sbjct 440438 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCG 440379 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| |||| || || ||||| | || | | |||||| ||| || Sbjct 440378 AGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCC-TG 440320 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || | || || | | | ||||| || || || || | || || || || Sbjct 440319 GATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTT 440260 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| |||||||||||||| Sbjct 440259 TCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 >seq21 Length=401567 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || | || |||| |||| ||| ||||||||||||||| ||||| Sbjct 241788 ACCACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTC 241847 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || | || |||||||||||||||||||| |||| ||||| ||||| | Sbjct 241848 CGAAAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 241907 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || ||||||||| ||| || ||| ||| | | | ||||| |||| Sbjct 241908 CGGGATGCCTTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAGGACT 241966 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | ||||| | || || || |||||||| || Sbjct 241967 CGACCTCGAGGGTGATGGTCTTACCCGTGAG 241997 >seq4 Length=1260884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| |||| || ||||||||| ||||| |||||||| | ||| || | Sbjct 784701 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCA 784642 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||||||||||||||| |||| ||||| ||||| | ||| | | |||||| Sbjct 784641 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 784582 Query 41768 TC 41769 || Sbjct 784581 TC 784580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303572368800