Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq70 127 4e-24 seq109 84.2 5e-11 >seq70 Length=136885 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || |||||||| || | || ||| | ||||||||||| ||||| || || ||| | Sbjct 75999 CTCATCGGCATGAATGCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCAGATCGCCTG 76058 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 |||| || ||||| || ||| ||||||||| | | ||||||||| | || ||||| Sbjct 76059 CTTGTCGCGCTTGGCGACCCGAAGGTGTACAACGCGACGAACCCCTTCGACTTCATGGAC 76118 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 ||||| ||||| || || ||||| ||||||||||| ||||| ||| ||||| Sbjct 76119 CTCATCTCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCGAGTCTCGGACTA 76171 Score = 100 bits (110), Expect = 6e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| || ||| | ||||||||||| ||||| || |||||| | Sbjct 73036 CTCATCGGCATGAACGCCCCGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTC 72977 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | || || |||| || |||||| | | |||||| || | || ||||| Sbjct 72976 CTGGTCTCGCTCGGGAACGAAAAGCACTACAACGCCACGAACCCATTCGACTTCATGGAC 72917 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTC 230610 || ||||| || || || |||||||| |||||||| ||||| ||| Sbjct 72916 CTGATTTCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTC 72872 >seq109 Length=99073 Score = 84.2 bits (92), Expect = 5e-11 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 281711 GAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTC 281770 |||||| | ||||| | ||| ||| |||||| |||||||| || ||| ||||| Sbjct 40154 GAAAACTTTCCGCGTAATCGGGGCGGGTTCCGTGAAAATATACCTGGCCGACGCATGGTC 40095 Query 281771 TTTACCACCCTGCAGCCTCGAC--CCAAACTGACCCTCCGGCAACAACCAGTTAATGTTA 281828 || |||||||| | | ||| || |||||||| | ||||| | ||| || || Sbjct 40094 CTTGCCACCCTG--GTCACGAGTACCGAACTGACCATTCGGCATAAGGATGTTCATATTG 40037 Query 281829 TTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTC-CCCTGAAGCGATACCTCACC 281887 ||||| |||| | | ||||| || ||||||||||| ||| | | || | || || || Sbjct 40036 TTGCTTCCGATGAAGTCCTGGGCGAGGTTGACGATAGTCTGCATCAAAC-TCACTTCTCC 39978 Query 281888 GTGGTGATA-GGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTT 281938 |||||| || | || |||||| | || ||||| || ||| || ||||| Sbjct 39977 GTGGTGGTATTGAGC-GTGTTCAGAGACGTAACCGACGAGCTGCGCGACCTT 39927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814350000560