Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq70 179 4e-40 >seq70 Length=136885 Score = 179 bits (198), Expect = 4e-40 Identities = 390/579 (67%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || || || || || | ||| || ||||| ||| || | ||||| || | |||||| Sbjct 75854 TTGAGGTGGTTGAAGAGCAGGCACGCGAAGTCGGTGTGCATACCCTCATCACGGCTGATG 75795 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 || ||||| || || |||| |||||||| || || ||||| | ||| || |||| Sbjct 75794 AGCTCGTTCGAGAACGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAC 75735 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 |||||||| ||||| ||||| ||||||||||| | ||| || || || | || |||||| Sbjct 75734 GCGAACGAGCCAGAGAAGAAGATACCCTCGACCGCTGCGAAGGCAATAAGACGCTCGGCG 75675 Query 17123 TACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 ||| | | ||| | ||| ||||| | |||| || || || | ||| ||||| Sbjct 75674 AACGAGGATTTCTTG-TCCGAGATCCAACGGAGGGCCCAGTCCGCCTTCTTCTTGATGCA 75616 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || || || || || | ||| | | ||| | | |||| | ||||| || Sbjct 75615 GGGGATGGTGTCGATCGCGTCAAACAGGTGCTCACGCTGCGTGGGGTCCTTGATATAGGT 75556 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 |||||||| || |||| | |||||||| ||||||||||| ||||| || ||||| Sbjct 75555 GTCGATGAGGAGCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTA 75496 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361 ||||| || || || || | || ||||| | |||| || || | ||||| || || Sbjct 75495 GAAGCACCGTGCCTCAGCAACCTGTACTTCGTTGGAGAACCGCTCGACGAGATTCTCATT 75436 Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 || ||||||||| ||| |||||||| || | | ||| ||||| | ||||| Sbjct 75435 GACAATGCCGTCGGACGCAGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGGCGCTCGTC 75376 Query 17422 --CGGT-GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGT 17478 || | | | | ||||||| | | || ||||||| |||| || || | ||| Sbjct 75375 GTCGTTCAGACGGTTGTGCCAGTCATGCAGGTCCTTGGATAGGTCCATCTCCTCTGCGGT 75316 Query 17479 CCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||| || ||| | ||||| || ||||| | ||| || Sbjct 75315 CCAGAACGACGCCTCAGCCTTCTTGTACATCTGCCAGAT 75277 Score = 141 bits (156), Expect = 1e-28 Identities = 297/443 (67%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 16949 TGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCG 17008 |||| |||| ||||||||| || ||| || | ||||| || | |||||| || ||| Sbjct 73190 TGTTGGAACAGCAGACATGCAAAGTCGGTGTGCATACCCTCATCGCGGCTGATGAGCTCG 73249 Query 17009 TTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAAC 17068 || || || |||| |||||||| || || ||||| | ||| || |||| |||||| Sbjct 73250 TTCGAGAACGTCAGGCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATCGACGCGAAC 73309 Query 17069 GACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC 17128 || || || ||||| || || ||||| | || ||||| | | || || | ||||| Sbjct 73310 GAGCCGGAGAAGAAAATGCCTTCGACCGCGGCGAACGCAACAAGCCGCTCCGTAAACGTC 73369 Query 17129 GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATC 17188 | | ||||| ||||| | || |||| || || || | ||| ||||| || Sbjct 73370 GACTTTTTGTCCGCGATCCAGCGCAGCGCCCAGTCCGCCTTCTTCTTGATGCACGGCACG 73429 Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248 || || || || | || | | ||| | || | || | || || || |||||| Sbjct 73430 GTCTCGATCGCGTCGAACAGGTGCTCGCGCACATGCGGCTCCTTGATGTAGGTGTCGATG 73489 Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || || ||| | |||||||| ||||||||||| ||||| || ||||| || || Sbjct 73490 AGGAGCGAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAACAC 73549 Query 17309 CGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATG 17368 || || || || | || || || | |||| || || || || ||||| ||||| Sbjct 73550 CGCGCCTCGGCGACCTGCACCTCGTTGGAGAACCGCTCGAGGAGGTTCTCGTTGACGATC 73609 Query 17369 CCGTCGCTCGCGGCGAAAAACGC 17391 ||||| ||||||||||| || Sbjct 73610 CCGTCCGAGGCGGCGAAAAAGGC 73632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517540993844160