Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq70 414 1e-110 seq52 150 2e-31 seq1 141 1e-28 seq116 111 2e-19 seq55 96.9 4e-15 >seq70 Length=136885 Score = 414 bits (458), Expect = 1e-110 Identities = 486/655 (74%), Gaps = 9/655 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||||||||||||||||| |||||| ||||||| Sbjct 75277 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCGTTCTGGACCGCAGAGGAGATGGACCTA 75336 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | |||||| | || |||||||| |||||||||| |||||| | Sbjct 75337 TCCAAGGACCTGCATGACTGGCACAACCGTCTGAACGACGACGAGCGCCACTTCATCTCG 75396 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||||||||| || ||||||||| ||||| |||||||| |||||||| Sbjct 75397 CACGTCCTCGCCTTTTTCGCTGCGTCCGACGGCATTGTCAATGAGAATCTCGTCGAGCGG 75456 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | || || ||||| || ||||| ||||||||||||||||| |||||| ||| Sbjct 75457 TTCTCCAACGAAGTACAGGTTGCTGAGGCACGGTGCTTCTACGGCTTCCAGATCATGATG 75516 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCG 116929 |||||| | ||||| || | ||| ||| |||||||||||| || | | | | || Sbjct 75517 GAGAACATCCACTCCGAGACGTACTCGCTCCTCATCGACACCTATATCAAGGACCCCACG 75576 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || ||| || |||| |||| ||||| || || || ||| |||| ||||||| Sbjct 75577 CAGCGTGAGCACC---TGTTTGACGCGATCGACACCATCCCCTGCATCAAGAAGAAGGCG 75633 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || || |||||| | | || | || | |||| |||||| || | ||| Sbjct 75634 GACTGGGCCCTCCGTTGGATCTCGGACAAGAAATCCTCGTTCGCCGAGCGTCTTATTGCC 75693 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| || |||||||| ||||||| || ||| ||||| | || || ||||||||| Sbjct 75694 TTCGCAGCGGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCGTCGATCTTCTGGCTCAAG 75753 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || ||||| ||||||||||||||||| ||| |||||||||||| | | || |||||| Sbjct 75754 AAGCGCGGTCTCATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGTGATGAGGGT 75813 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| |||||| || || |||| ||||| || | || ||| || | | | | Sbjct 75814 ATGCACACCGACTTCGCGTGCCTGCTCTTCAACCACCTCAAGCGGCGGCCTCACCCCGAG 75873 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 ||||| | |||| ||| || || |||| ||||||||| |||||||||| Sbjct 75874 GTCGTCAAGAGGATCATCATGGAGGCCGTCGAGATCGAGCAGGAGTTCCTCACCG 75928 Score = 405 bits (448), Expect = 5e-108 Identities = 489/661 (74%), Gaps = 21/661 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 || |||||| | ||||| || ||||| || || |||||||| | |||||| | ||||| Sbjct 73761 ATCTGGCGCTTCTACAAGAAAGCCGAAGCATCATTCTGGACAGCTGAGGAGATCGACCTC 73702 Query 116695 -GTCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCA 116750 ||| | ||| | ||||||||| || |||||||||||||||| |||| ||| Sbjct 73701 AGTC--ACGACCTCTGGGACTGGGAGAACCGGCTGAACGACAACGAGCGATATTTTATCT 73644 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 |||||| || ||||||||||||||| ||||| |||||||||||||| || |||||| Sbjct 73643 CGCACGTCCTCGCCTTTTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCCTCGAGC 73584 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| | | ||||||||||| |||||||||||||| ||||||||||| |||||| | Sbjct 73583 GGTTCTCCAACGAGGTGCAGGTCGCCGAGGCGCGGTGTTTCTACGGCTTCCAGATCATGA 73524 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCT 116926 |||||||| | ||||| || | ||||||| |||||||||||| ||| | | || Sbjct 73523 TGGAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACCTACATCAAGGAGC--- 73467 Query 116927 TCGGAGGAG---AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983 || | | | ||| || |||| |||| |||||||| |||||||| |||| || Sbjct 73466 -CGCATGTGCGCGAGCACC---TGTTCGACGCGATCGAGACCGTGCCGTGCATCAAGAAG 73411 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||| || |||||||||||||||||||| | || | || | | || ||||| || Sbjct 73410 AAGGCGGACTGGGCGCTGCGCTGGATCGCGGACAAAAAGTCGACGTTTACGGAGCGGCTT 73351 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || ||||| || ||||| ||| | ||||| || ||| ||||| | || || ||| Sbjct 73350 GTTGCGTTCGCCGCGGTCGAAGGCATTTTCTTCTCCGGCTCGTTCGCGTCGATCTTCTGG 73291 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || || |||||||||||||| ||| |||||||||||| | | || Sbjct 73290 CTCAAGAAGCGTGGTCTTATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGCGAT 73231 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||||| |||| ||||||||| ||| |||||||| | || ||| | |||| || | Sbjct 73230 GAGGGTATGCACACCGACTTTGCATGTCTGCTGTTCCAACACTTGCGCCGGCGATCGCAC 73171 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | |||| ||| | ||||| || ||||||||||||||| ||||||| | Sbjct 73170 CCATCTGTCGTCCTTCGAATCATTACCGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAGC 73111 Query 117284 G 117284 | Sbjct 73110 G 73110 >seq52 Length=153599 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| ||||||||| |||| || || || | Sbjct 49497 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCG 49556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||||| ||||| ||||||||||| | |||||| Sbjct 49557 GACACCATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 49616 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| |||||||| ||||| || |||| ||||| || ||||||||| Sbjct 49617 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCGGACTACAAC 49676 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| || ||||| Sbjct 49677 ATCCAGAAGGAGAGCACCCTTCATCT 49702 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || || ||| |||| || ||| || | Sbjct 49216 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCG 49275 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 49276 GACACTATAGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 49334 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| ||||| || || | ||||| || |||||||| Sbjct 49335 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAA 49394 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| ||||||||| ||| || || || Sbjct 49395 CATTCAGAAGGAGAGCACCCTTCACCT 49421 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || || || | || Sbjct 50061 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCC 50120 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | || || ||||||||||| | ||||| Sbjct 50121 GATACCATTGACAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCCGACCA 50179 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| ||||| || || | ||||| ||| |||||||| Sbjct 50180 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCAGACTACAA 50239 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| || || Sbjct 50240 CATCCAGAAGGAGAGCACCCTTCA 50263 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | || || || | | Sbjct 49780 ATGCAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCT 49839 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| ||||| |||| ||| Sbjct 49840 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAG 49899 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||| |||| || | || || ||| |||||||||| Sbjct 49900 CAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAAC 49959 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||||||| ||| || || || Sbjct 49960 ATTCAGAAGGAGAGCACCCTTCACCT 49985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | |||||||| || ||||| | ||| || |||||||| || |||| |||| Sbjct 49038 GCATCCCACCTGACCAGCAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGCCGCA 49097 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||| |||||||||||||||||||||| ||| || ||||| Sbjct 49098 CCCTTTCCGACTACAACATCCAGAAGGAGAGCACTCTCCATCT 49140 >seq1 Length=721539 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| |||| |||||| || | Sbjct 158386 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCT 158327 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| |||||||| || | ||||| Sbjct 158326 GACACGATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 158268 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| || ||| | ||||||||| Sbjct 158267 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCTTGTCCGACTACAA 158208 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 158207 TATCCAGAAGGAGTCTACCCTGCACCTCGT 158178 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || ||||| |||| ||||| || | Sbjct 157870 ATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAAGTCGAGTCCTCT 157811 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | || || Sbjct 157810 GACACGATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGATCA 157752 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| | ||| || || Sbjct 157751 GCAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGTTGTCCGATTATAA 157692 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 157691 TATCCAGAAGGAGTCTACCCTGCACCTCGT 157662 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || || |||||| | || || || | || Sbjct 157414 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCC 157355 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || |||| || || |||||||| ||| | || || Sbjct 157354 GACACGATTGACAACG-TGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCA 157296 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| ||||| || |||| | || || || ||||| Sbjct 157295 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAA 157236 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 157235 CATCCAGAAGGAGTCTACACTTCACCTTGT 157206 >seq116 Length=96108 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||||||| |||||||||| || ||||||| ||| ||||| ||||| || || | |||| Sbjct 9881 GCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCA 9822 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| | |||||||||||||||||||||| |||| || || || || Sbjct 9821 CCCTGAGCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGT 9776 >seq55 Length=147043 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 || ||| | || ||||| || || |||| ||| ||||| ||||| || |||| ||||| Sbjct 25971 ATTCCCCCCGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACT 26030 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||| |||||||||||||||||||||| |||| || || || ||| | ||| Sbjct 26031 CTCAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGC 26081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214614549120